View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_7 (Length: 413)
Name: NF6577_high_7
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 32099973 - 32100080
Alignment:
| Q |
203 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcttgtggatagaaaaaatgttagaaaggtaactagagggtctgtcgggt |
302 |
Q |
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| T |
32099973 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcctgtggat-gaaaaaatgttagaaaggtaactagagggtcagtcgggt |
32100071 |
T |
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| Q |
303 |
ttcctaata |
311 |
Q |
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| T |
32100072 |
ttcctaata |
32100080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 32100362 - 32100449
Alignment:
| Q |
310 |
taatattattggcaaagtcaaagtcactggatactttgaatcttacgctttnnnnnnnttgaacgcttcccatccttacctttaaata |
397 |
Q |
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| T |
32100362 |
taatattattggcaaagtcaaagtcactggatactttgaatcttacgctttaaaaaaattgaacgcttcccatccttacctttaaata |
32100449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 32099776 - 32099910
Alignment:
| Q |
1 |
aatatattacatttgcccatagttataagtttgttttagnnnnnnn-----ttagctcaacatataatcttcgagccaaattaataaatacgnnnnnnnc |
95 |
Q |
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| T |
32099776 |
aatatattacatttgcccatagttataagtttgttttagaaagaaaaaaaattagctcaacatataatcttcgagccaaattaataaatacg-ttttttc |
32099874 |
T |
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| Q |
96 |
aagtctatatatttcaatccctataacttatctgcg |
131 |
Q |
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| T |
32099875 |
aagtctatatatttcaatccctataacatatctgcg |
32099910 |
T |
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