View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_high_9 (Length: 384)
Name: NF6577_high_9
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 44661197 - 44660842
Alignment:
| Q |
20 |
ctttgactcacagtgtcttccttcagtttgcaccatcatctctgcaatgatttatcaataggtcattaatatgattaatataaacatattttactaaaaa |
119 |
Q |
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| T |
44661197 |
ctttgactcacagtgtcttccttcagtttgcaccatcatctctgcaatgatttatcaatagctcattaatatgattaatataaacatattttactaaaaa |
44661098 |
T |
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| Q |
120 |
caatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgtt |
219 |
Q |
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| T |
44661097 |
caatagatttcgttaactacatatgtatatgccacttaaaagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgtt |
44660998 |
T |
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| Q |
220 |
catgtttactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtatttggcactcgtatctatttatagaggtagagggagt |
319 |
Q |
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| T |
44660997 |
catgattactgcttgctacaatcttcacctgaatttactatcctgttaatgaacaaacttgtatttggcactcgtatctatttatagaggtagagggagt |
44660898 |
T |
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| Q |
320 |
aaacatgaaaaaactaagtaaattaatgtattagtgactacgagaatgagaataat |
375 |
Q |
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| T |
44660897 |
aaacatgaaaaaactaagtaaattaatgtattagtgactacgagaatcagaataat |
44660842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 44650788 - 44650857
Alignment:
| Q |
159 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatgtttac |
228 |
Q |
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| T |
44650788 |
aagacttactagaagcaaggagaataaacaaaatgaataaaaccccaaagcgtgtcttgttcatgattac |
44650857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 44653915 - 44653851
Alignment:
| Q |
159 |
aagacttacgagaagcaaggagaataagcaaaatgaagaaaaatccaaagcgtgtcttgttcatg |
223 |
Q |
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| T |
44653915 |
aagacttaccaaaagtaagaagaataagtagaatgaagaaaaatccaaagcgagctttgttcatg |
44653851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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