View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6577_low_11 (Length: 344)
Name: NF6577_low_11
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 44234276 - 44233962
Alignment:
| Q |
14 |
gaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtgga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44234276 |
gaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtgga |
44234177 |
T |
|
| Q |
114 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44234176 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaa |
44234077 |
T |
|
| Q |
214 |
catttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttacc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44234076 |
catttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcagcgtggcttcgtttacc |
44233977 |
T |
|
| Q |
314 |
ttcaggagttgattc |
328 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44233976 |
ttcaggagttgattc |
44233962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 44223454 - 44223140
Alignment:
| Q |
14 |
gaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtgga |
113 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
44223454 |
gaaggagcaaggtgttagagaagacagattagtgcttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtgga |
44223355 |
T |
|
| Q |
114 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44223354 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaa |
44223255 |
T |
|
| Q |
214 |
catttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttacc |
313 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44223254 |
catttgctagaatttctggctactgtgagcagaatgatatccattcaccgcatgttacagtttatgagtctttgctttattcggcgtggcttcgtttacc |
44223155 |
T |
|
| Q |
314 |
ttcaggagttgattc |
328 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44223154 |
ttcaggagttgattc |
44223140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 44211292 - 44210978
Alignment:
| Q |
14 |
gaaggagcaaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtgga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
44211292 |
gaaggagcaaggtgttacagaggacagactagtgcttttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtgga |
44211193 |
T |
|
| Q |
114 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44211192 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaa |
44211093 |
T |
|
| Q |
214 |
catttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttacc |
313 |
Q |
| |
|
||||||||||||| || || |||||||| ||||||||||| |||||||||||||||||||||||||| || | |||||||| || |||||||||||||| |
|
|
| T |
44211092 |
catttgctagaatatctggctactgtgaacagaatgatattcattcacctcatgttacagtttatgaatcccttctttactcagcatggcttcgtttacc |
44210993 |
T |
|
| Q |
314 |
ttcaggagttgattc |
328 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
44210992 |
ttctggagttgattc |
44210978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 271
Target Start/End: Complemental strand, 43457792 - 43457590
Alignment:
| Q |
69 |
gcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatata |
168 |
Q |
| |
|
||||||||||| || || || |||||||| ||||| || ||||||||||| || |||||| ||||||||||| | ||||| ||||| |||||||| || | |
|
|
| T |
43457792 |
gcattcaggcctggagttctaacggctttaatgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttaca |
43457693 |
T |
|
| Q |
169 |
ttgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgt |
268 |
Q |
| |
|
|||| ||||| | | | ||||| | ||||| || |||||||||||||| ||||| || || ||||| || || | |||||||||||||| || || |
|
|
| T |
43457692 |
ttgaaggagatgttagaatctctggcttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatccattcaccacaagt |
43457593 |
T |
|
| Q |
269 |
tac |
271 |
Q |
| |
|
||| |
|
|
| T |
43457592 |
tac |
43457590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 32 - 313
Target Start/End: Original strand, 2886862 - 2887143
Alignment:
| Q |
32 |
agaggacagattagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctg |
131 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||| || || || || ||||| || ||||||||||||||||| ||| | |
|
|
| T |
2886862 |
agaggatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgggagttagtggagctggtaaaactacttta |
2886961 |
T |
|
| Q |
132 |
atggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccg |
231 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| |||||||| || ||| || |||||||||| |||||||| |||||||| |||||| ||||||| | |
|
|
| T |
2886962 |
atggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctg |
2887061 |
T |
|
| Q |
232 |
gttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttacc |
313 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| || |||||||| || | |||||||| |||||||||||||| |
|
|
| T |
2887062 |
gttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcactggtctactcggcctggcttcgtttacc |
2887143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 2877084 - 2877391
Alignment:
| Q |
21 |
caaggtgttacagaggacagattagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggta |
120 |
Q |
| |
|
|||||||| | |||||| || |||||||||||||||| |||||||| ||||| || || ||||| || || |||||||||||||| ||||||||||||| |
|
|
| T |
2877084 |
caaggtgtgatagaggataggctagtgcttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggta |
2877183 |
T |
|
| Q |
121 |
aaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgc |
220 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||| |||| ||||||||||| ||| || ||||||| || ||||||||||||||||||||||| |
|
|
| T |
2877184 |
aaactactttgatggatgtattggctggtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgc |
2877283 |
T |
|
| Q |
221 |
tagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttaccttcagga |
320 |
Q |
| |
|
||||||||| || || |||||||||||||||||||| || ||||| ||||| || |||||||| || || || || || |||||||||||||| ||| | |
|
|
| T |
2877284 |
tagaatctctggctattgtgagcagaatgatatccactcccctcaagttactgtctatgagtccttactgtattcagcttggcttcgtttaccggcagaa |
2877383 |
T |
|
| Q |
321 |
gttgattc |
328 |
Q |
| |
|
|||||||| |
|
|
| T |
2877384 |
gttgattc |
2877391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 32 - 328
Target Start/End: Complemental strand, 2897514 - 2897218
Alignment:
| Q |
32 |
agaggacagattagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctg |
131 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||| || || || || ||||| || ||||||||||||||||| ||| | |
|
|
| T |
2897514 |
agaggatagattagtacttttgaagggtgttagtggtgcatttaggcctggtgttctcacagcattaatgggagttagtggagctggtaaaactacttta |
2897415 |
T |
|
| Q |
132 |
atggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccg |
231 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||| ||||| ||||| ||| || |||| || || | ||||| |||||||| |||||| ||||||| | |
|
|
| T |
2897414 |
atggatgttttggctggtagaaaaaccggtggttatatcgatggcaccataaaaatttcaggctaccttaaaagacaagaaacgtttgctcgaatctctg |
2897315 |
T |
|
| Q |
232 |
gttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttaccttcaggagttgattc |
328 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| || |||||||| || | |||||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
2897314 |
gttattgtgagcagaatgatatccattctcctcatgttactgtctatgagtcaatggtctactcggcctggcttcgtttaccagcagaagttgattc |
2897218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 313
Target Start/End: Complemental strand, 2161113 - 2160848
Alignment:
| Q |
48 |
cttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg |
147 |
Q |
| |
|
|||||||||||| | | |||||| || ||||| || ||||| || |||||||||||||||||||| || || || || ||||| ||||||||| | |||| |
|
|
| T |
2161113 |
cttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtgtaagtggtgccggaaagactactctaatggatgttttagctg |
2161014 |
T |
|
| Q |
148 |
gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaa |
247 |
Q |
| |
|
| |||||||| |||||||||||||||||| |||||| | || || ||||| || || ||| ||||||||||| | || || || || || ||||| |
|
|
| T |
2161013 |
gaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaatcaaaaaacatttgctcgcatatcgggatattgcgagcaatt |
2160914 |
T |
|
| Q |
248 |
tgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttacc |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| | || ||||| |||||||||||||| |
|
|
| T |
2160913 |
tgatatccattcacctaatgttacagtttatgaatctttgttatattcggcatggcttcgtttacc |
2160848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 2149130 - 2148994
Alignment:
| Q |
48 |
cttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg |
147 |
Q |
| |
|
|||||||||||||||||||| || || || || || ||||| || |||||||||||||||||||| ||||| || || ||| | ||||||||| | |||| |
|
|
| T |
2149130 |
cttttgaagggtgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagctg |
2149031 |
T |
|
| Q |
148 |
gtaggaaaacaggtggatatattgatggagacatcaa |
184 |
Q |
| |
|
| | ||||| ||||||| ||||| ||| ||||||| |
|
|
| T |
2149030 |
gaataaaaactagtggatacattgaaggaaacatcaa |
2148994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 41687888 - 41687779
Alignment:
| Q |
63 |
agtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtg |
162 |
Q |
| |
|
||||| || |||||||| || ||||| ||||| || | ||||||| ||| ||||| ||||| || || ||||||||||| ||||| || ||||| |||| |
|
|
| T |
41687888 |
agtggtgctttcaggcctggagtactaacggcattagttggtgtaactggtgctggaaaaaccacactaatggatgttcttgctggaagaaaaactggtg |
41687789 |
T |
|
| Q |
163 |
gatatattga |
172 |
Q |
| |
|
| |||||||| |
|
|
| T |
41687788 |
gttatattga |
41687779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 39547743 - 39547502
Alignment:
| Q |
48 |
cttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg |
147 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||||| || || ||| |||||||||| | ||| || || |||||||||||||||||||| || ||| |
|
|
| T |
39547743 |
cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgcaggcaaaacaactctgatggatgtactttctg |
39547644 |
T |
|
| Q |
148 |
gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaa |
247 |
Q |
| |
|
|||| ||||| ||||||||||||| ||| |||||| | ||||| ||||| || |||||||| || ||||| ||||| || || ||||||||||| | |
|
|
| T |
39547643 |
gtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacctttgcaagaatttcaggatactgtgagcaaac |
39547544 |
T |
|
| Q |
248 |
tgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| |||||||| |
|
|
| T |
39547543 |
tgatatccattctcctcatgttactgtctatgaatctttgct |
39547502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 286
Target Start/End: Original strand, 39365925 - 39366169
Alignment:
| Q |
42 |
ttagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttc |
141 |
Q |
| |
|
||||| ||| |||||||| ||||||| || ||||| || ||||| || |||||| |||||||||| | || ||||| |||||||||||||||||||| | |
|
|
| T |
39365925 |
ttagttcttctgaagggtcttagtggagctttcagaccaggtgttctcacggctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgc |
39366024 |
T |
|
| Q |
142 |
tggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtga |
241 |
Q |
| |
|
| ||||||| ||||| ||||||||||||| ||| |||||| | ||||| ||||| || ||||||||||| ||||| ||||| || || ||||| || |
|
|
| T |
39366025 |
tttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagaaacctttgcaagaatttctggatactgcga |
39366124 |
T |
|
| Q |
242 |
gcagaatgatatccattcacctcatgttacagtttatgagtcttt |
286 |
Q |
| |
|
||| | |||||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
39366125 |
gcaaactgatatccattctcctcatgttactgtctatgaatcttt |
39366169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 39338572 - 39338819
Alignment:
| Q |
42 |
ttagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttc |
141 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||| || ||||| || || ||| ||||||| | | || ||||| |||||||||||||||||||| | |
|
|
| T |
39338572 |
ttagttcttttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaaacaactctgatggatgtgc |
39338671 |
T |
|
| Q |
142 |
tggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtga |
241 |
Q |
| |
|
| ||||||| ||||| ||||||||||||| ||| ||||||| |||| || | ||| || ||||||||||| ||||| ||||| || || |||||||| |
|
|
| T |
39338672 |
tttctggtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaagaatttctggatactgtga |
39338771 |
T |
|
| Q |
242 |
gcagaatgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
||| | |||||||||||| ||||||||||| || ||||| |||||||| |
|
|
| T |
39338772 |
gcaaactgatatccattctcctcatgttactgtctatgaatctttgct |
39338819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 39353415 - 39353662
Alignment:
| Q |
42 |
ttagtgcttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttc |
141 |
Q |
| |
|
||||| ||||| |||||||| ||||| || ||||| || ||||| || |||||| ||||||| | | ||| ||||| ||||||||||| |||||||| | |
|
|
| T |
39353415 |
ttagttcttttaaagggtgtaagtggagctttcagaccaggtgttctcacggctctgatgggcatcactggtgctggaaaaacaactctaatggatgtgc |
39353514 |
T |
|
| Q |
142 |
tggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtga |
241 |
Q |
| |
|
| ||||||| ||||| ||||||||||||| ||| |||||| |||| || ||||| |||||||||||||| ||||| ||||| || || |||||||| |
|
|
| T |
39353515 |
tttctggtagaaaaaccggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacctttgcaagaatttctggatactgtga |
39353614 |
T |
|
| Q |
242 |
gcagaatgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
||| | |||||||||||| ||| ||||||| || ||||| |||||||| |
|
|
| T |
39353615 |
gcaaactgatatccattctccttatgttactgtctatgaatctttgct |
39353662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 99 - 289
Target Start/End: Complemental strand, 39575282 - 39575092
Alignment:
| Q |
99 |
atgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatc |
198 |
Q |
| |
|
|||||||| | ||| ||||| ||||||||| |||||||||| || ||||||||||||| || ||||||||| ||| |||||| ||||| ||| ||| |
|
|
| T |
39575282 |
atgggtgtcactggtgctggcaaaacaactttgatggatgtacttgctggtaggaaaagtgggggatatattagtgggaacatcacagtttccgggcatc |
39575183 |
T |
|
| Q |
199 |
ctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
| |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || || |||||| |||| || |||||||||||||| |
|
|
| T |
39575182 |
ccaaaaagcaagaaacctttgcaagaatttccggatactgtgagcaaaatgatatacactctcctcatattacggtctatgagtctttgct |
39575092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 39564522 - 39564281
Alignment:
| Q |
48 |
cttttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg |
147 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || ||||| || || ||| | |||||||| | || ||||| |||||||||||||||||||| || ||| |
|
|
| T |
39564522 |
cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg |
39564423 |
T |
|
| Q |
148 |
gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaa |
247 |
Q |
| |
|
|||||||||| || |||||||||| ||| |||||| |||| || | ||| || ||||||||||| ||||| ||||| || || ||||||||||| || |
|
|
| T |
39564422 |
gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa |
39564323 |
T |
|
| Q |
248 |
tgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
||||||||| || ||| ||||||| || ||||| |||||||| |
|
|
| T |
39564322 |
tgatatccactctccttatgttactgtctatgaatctttgct |
39564281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 114 - 316
Target Start/End: Complemental strand, 39589505 - 39589303
Alignment:
| Q |
114 |
gctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaa |
213 |
Q |
| |
|
||||| ||||| ||| || ||||||| || ||||||| ||||| ||||||||||||| ||| ||||| ||||||| |||||||| |||||||||| |
|
|
| T |
39589505 |
gctggaaaaactactttgttggatgtgctttctggtagaaaaactggtggatatattggtgggaccatcacaatttctggatatcctaagaagcaagaaa |
39589406 |
T |
|
| Q |
214 |
catttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgctttactcggcgtggcttcgtttacc |
313 |
Q |
| |
|
||||||| ||||| || || ||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| || || || |||||||| || || |
|
|
| T |
39589405 |
catttgcaagaatttctggatactgtgagcaaaatgatatccactctcctcatgttactgtatatgaatctttgctctattcagcatggcttcgattgcc |
39589306 |
T |
|
| Q |
314 |
ttc |
316 |
Q |
| |
|
||| |
|
|
| T |
39589305 |
ttc |
39589303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 120 - 289
Target Start/End: Complemental strand, 39538213 - 39538044
Alignment:
| Q |
120 |
aaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttg |
219 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| ||||||||||||| ||| |||||| ||||||| ||||| || |||||||| || |||| |
|
|
| T |
39538213 |
aaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttg |
39538114 |
T |
|
| Q |
220 |
ctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
| ||||| || || ||||||||||| | |||||||||||| ||| ||||||| || ||||| |||||||| |
|
|
| T |
39538113 |
caagaatttcaggatactgtgagcaaactgatatccattctccttatgttactgtctatgaatctttgct |
39538044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 289
Target Start/End: Complemental strand, 1085013 - 1084838
Alignment:
| Q |
115 |
ctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcc-ta-aaaagcaagaa |
212 |
Q |
| |
|
|||| ||||||||| |||||||||| || ||||||| ||||| | ||||||||||| ||| |||||| ||||||| ||||| || ||||||||||| |
|
|
| T |
1085013 |
ctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaa |
1084915 |
T |
|
| Q |
213 |
acatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
|||||| | ||||| || || ||||||||||| | ||||||||||| |||||| |||| || || ||||||||||| |
|
|
| T |
1084914 |
acatttacaagaatttctggatactgtgagcaaatagatatccattctcctcattttactgtctacgagtctttgct |
1084838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 289
Target Start/End: Complemental strand, 39622336 - 39622098
Alignment:
| Q |
51 |
ttgaagggtgttagtggcgcattcaggcccggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggta |
150 |
Q |
| |
|
||||| ||||| ||||| ||||||| || | ||| || || ||| |||||||||| | ||| ||||| |||||||||||||||||||| || ||||| | |
|
|
| T |
39622336 |
ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa |
39622237 |
T |
|
| Q |
151 |
ggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatga |
250 |
Q |
| |
|
| ||||| | |||||||||| ||| ||||| ||||||| ||| | || ||||| ||||| ||||| ||| | | || |||||||| || ||| | |
|
|
| T |
39622236 |
gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta |
39622137 |
T |
|
| Q |
251 |
tatccattcacctcatgttacagtttatgagtctttgct |
289 |
Q |
| |
|
||||||||| ||| ||||||| || ||||| || ||||| |
|
|
| T |
39622136 |
tatccattctccttatgttactgtatatgaatcattgct |
39622098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 280
Target Start/End: Original strand, 49773117 - 49773298
Alignment:
| Q |
99 |
atgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatc |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| ||| |||| ||||||||| |||||| || | ||| | |||| | || ||||| | |
|
|
| T |
49773117 |
atgggtataagtggagctggtaaaacaactctaatggatgtgctgtctggaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtacc |
49773216 |
T |
|
| Q |
199 |
ctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaatgatatccattcacctcatgttacagtttatga |
280 |
Q |
| |
|
|||| ||||||||||||||| || | || || || ||||||||||| | ||||||||| || || |||||||| || ||||| |
|
|
| T |
49773217 |
ctaagaagcaagaaacattttctcggatatcaggatactgtgagcaaactgatatccactctccccatgttactgtctatga |
49773298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 25523449 - 25523352
Alignment:
| Q |
81 |
ggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctggtaggaaaacaggtggatatattgatggaga |
178 |
Q |
| |
|
||||||||||| || || ||||| |||||||||||| ||||| ||| | |||||||| || || || ||||||||||| |||||||| || ||||| |
|
|
| T |
25523449 |
ggtgtacttacagcattaatgggatcaagtggagctgggaaaaccactttaatggatgtgcttgcaggaaggaaaacaggaggatatatcgagggaga |
25523352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University