View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_low_16 (Length: 292)
Name: NF6577_low_16
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 52113980 - 52113709
Alignment:
| Q |
5 |
ttaattcaccggctatggatctggacggcgcatattttacacacttagttttgatttcccaatacaagtcttcaatttcaacttgctatgttaatctcac |
104 |
Q |
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| T |
52113980 |
ttaattcaccggctatggatctggacggcgcatattttacacacttagttttgatttcccaatacaagtcttcaatttcaacttgctatgttaatctcac |
52113881 |
T |
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| Q |
105 |
gttgattatccataaatacaagtttcaaagtccactacaatcacttctcatttctcaattatccccttcccacaaattgtaacattttc--ccccgttca |
202 |
Q |
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| T |
52113880 |
gttgattatccataaatacaagtttcaaagtccactacaatcacttctcatttctcaattatccccttcccacaaattgtaacattttcccccccgttca |
52113781 |
T |
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| Q |
203 |
cttccttcatttcattttgtgtgtctaatctaaagtctgatcctaattagttccaaacctaaaaatggcatc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52113780 |
cttccttcatttcattttgtgtgtctaatctaaagtctgatcctaattagttccaaacctaaaaatggcatc |
52113709 |
T |
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