View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_low_17 (Length: 290)
Name: NF6577_low_17
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_17 |
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| [»] scaffold0368 (1 HSPs) |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42837464 - 42837184
Alignment:
| Q |
1 |
cggaaaatcgatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcaccagtaactcactttc |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
42837464 |
cggaaaatcaatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcgccggtaactcactttc |
42837365 |
T |
|
| Q |
101 |
tcccaccgattcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42837364 |
tcccaccgattcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaa |
42837265 |
T |
|
| Q |
201 |
ttataactttttcttcattgttagaatagtttttgttc-ttttctcatcgttagttgttgtatttcgtttctttctctgtg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| |
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| T |
42837264 |
ttataactttttcttcattgttagaatagtttttgttctttttttcattgttagttgttgtatttcgtttctttctctgtg |
42837184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 35598595 - 35598750
Alignment:
| Q |
120 |
tattgattgtgtgaatttttctaatttcgaat--ttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaattataactttttcttca |
217 |
Q |
| |
|
|||||||| |||| ||||| |||||| |||| |||||| |||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||| |
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| T |
35598595 |
tattgattttgtgcattttgataattttgaatctttgacaatagggtttgaaaattgttgattttgatatgtgattgtgtgaaatatagctttttcttca |
35598694 |
T |
|
| Q |
218 |
ttgttagaatagtttttgttc-ttttctcatcgttagttgttgtatttcgtttctt |
272 |
Q |
| |
|
|||||||| |||||||||||| |||| |||| |||||||||||||||||||||||| |
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|
| T |
35598695 |
ttgttagattagtttttgttctttttttcattgttagttgttgtatttcgtttctt |
35598750 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 272
Target Start/End: Original strand, 35599177 - 35599341
Alignment:
| Q |
113 |
atgttcatattgattgtgtgaatttttctaatttcgaat--ttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaattata-actt |
209 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
35599177 |
atgttcatattgattgtgtgcattttgataattttgaatccttgacaatagggtttgaaaatcgttgattttgatatgtgattgtgtgaattatagtctt |
35599276 |
T |
|
| Q |
210 |
tttcttcattgttagaatagtttttgttcttttct--catcgttagttgttgtatttcgtttctt |
272 |
Q |
| |
|
||| | ||||||||| |||||||||||||||| | || |||||||||||||||||||||||| |
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|
| T |
35599277 |
tttttctattgttagattagtttttgttctttttttctattgttagttgttgtatttcgtttctt |
35599341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13343 - 13569
Alignment:
| Q |
1 |
cggaaaatcgatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcaccagtaactcactttc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
13343 |
cggaaaatcaatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcgccggtaactcactttc |
13442 |
T |
|
| Q |
101 |
tcccaccgattcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatacgtgattgtgtgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
13443 |
tcccaccgattcatgttcatattgattgtgtgaatttttctaatttccaatttgacattagggtttg-aaatcgttgattttgatatgtgattgtgtgaa |
13541 |
T |
|
| Q |
201 |
ttataactttttcttcattgttagaata |
228 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
13542 |
ttatacttttttcttcattgttagaata |
13569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 7390269 - 7390428
Alignment:
| Q |
17 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcaccagtaactcactttctcccaccga------- |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
7390269 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
7390368 |
T |
|
| Q |
110 |
ttcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa |
169 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
7390369 |
ttcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa |
7390428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 19586843 - 19586684
Alignment:
| Q |
17 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcaccagtaactcactttctcccaccgattca--- |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
19586843 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
19586744 |
T |
|
| Q |
114 |
----tgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa |
169 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
19586743 |
ttcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa |
19586684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 19586544 - 19586484
Alignment:
| Q |
174 |
gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagttttt |
234 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19586544 |
gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagttttt |
19586484 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 7390568 - 7390628
Alignment:
| Q |
174 |
gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagttttt |
234 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
7390568 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttt |
7390628 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 11658697 - 11658538
Alignment:
| Q |
17 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcaccagtaactcactttctcccaccgattca--- |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| |
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|
| T |
11658697 |
ctgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcctaccgattcatgt |
11658598 |
T |
|
| Q |
114 |
----tgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa |
169 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
11658597 |
ttcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa |
11658538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 50234528 - 50234460
Alignment:
| Q |
174 |
gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttctttt |
242 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50234528 |
gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagtttttgttctttt |
50234460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 280
Target Start/End: Complemental strand, 11658275 - 11658169
Alignment:
| Q |
174 |
gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttc-ttttctcatcgttagttgttgtatttcgtttctt |
272 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| |||| |||| ||||||| ||||| ||||| ||| |
|
|
| T |
11658275 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttttttctttttttcattgttagtttttgta-atcgttactt |
11658177 |
T |
|
| Q |
273 |
tctctgtg |
280 |
Q |
| |
|
|||||||| |
|
|
| T |
11658176 |
tctctgtg |
11658169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 50234581 - 50234545
Alignment:
| Q |
133 |
aatttttctaatttcgaatttgacattagggtttgaa |
169 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
50234581 |
aattttgctaatttcgaatttgacattagggtatgaa |
50234545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 51655407 - 51655566
Alignment:
| Q |
17 |
ctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcaccagtaactcactttctcccaccga------- |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
51655407 |
ctgatccacgcacatctcgccgactccgcaatttccgccggaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgt |
51655506 |
T |
|
| Q |
110 |
ttcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaa |
169 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
51655507 |
ttcatgttcatattgatagtgtgaattttgctaattttgaatttgacattagggtttgaa |
51655566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 87 - 155
Alignment:
| Q |
174 |
gttgattttgatacgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttctttt |
242 |
Q |
| |
|
||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
87 |
gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagtttttgttctttt |
155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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