View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6577_low_2 (Length: 701)

Name: NF6577_low_2
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6577_low_2
NF6577_low_2
[»] chr4 (4 HSPs)
chr4 (11-533)||(53037341-53037863)
chr4 (24-533)||(39995742-39996251)
chr4 (595-683)||(53037191-53037279)
chr4 (618-656)||(39996336-39996374)


Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 533
Target Start/End: Complemental strand, 53037863 - 53037341
Alignment:
Q  11 catcatcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037863 catcatcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccata 53037764  T
Q  111 aattggcaatgtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaactta 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037763 aattggcaatgtcaaccaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaactta 53037664  T
Q  211 gtcaaatcctcttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcatacccta 310  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037663 gtcaaatcctcttgcttcttaaaatactcgattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcatacccta 53037564  T
Q  311 aaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037563 aaggcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcct 53037464  T
Q  411 ccaatcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037463 ccaatcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctc 53037364  T
Q  511 gtataacctcgaccattgctagg 533  Q
    |||||||||||||||||||||||    
T  53037363 gtataacctcgaccattgctagg 53037341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 24 - 533
Target Start/End: Original strand, 39995742 - 39996251
Alignment:
Q  24 actaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat 120  Q
    ||||||||||||||| |||||||||||   |   |||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||||||||||    
T  39995742 actaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaattggcaat 39995841  T
Q  121 gtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcct 220  Q
    | ||||||||||  |||||||||||| ||||| | |||||| ||||| || ||| || |||| |    | | ||||||||||| |||||||||||||| |    
T  39995842 gacaaccaactagtcactcctaaattaggattccaataaaaaggccccttctcaccattccctac---aacttgaagatcttggaacttagtcaaatctt 39995938  T
Q  221 cttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttaga 320  Q
    ||||||||||||| |||||| | ||||  || | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  39995939 cttgcttcttaaagtactcattccccaacctaatatactcatcgttcactttctcaaccgcttcccttatcctacttgaagcataccctaagggtttaga 39996038  T
Q  321 tattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaaca 420  Q
     |||||||| ||||| ||||||||||||| |||||| ||| |  ||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||    
T  39996039 cattaaatcacctgctagactagtagccaaaacatctaaaatggcattcccaaaataccctttaggtaaattaggttccacacgacgcctccaatcaaca 39996138  T
Q  421 caaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgtataacctc 520  Q
    |||||||||||||  ||| |||||||||||  |||| |||| ||||||| |||||||||||||| |||||||||||  |||||||| |||| ||||||||    
T  39996139 caaacaccaagcgcggttggttggtcatttttatgctctcttgctttacatgcacttctccaaatatgaccggttactgtttcatacctcgaataacctc 39996238  T
Q  521 gaccattgctagg 533  Q
    ||||||| |||||    
T  39996239 gaccattactagg 39996251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 595 - 683
Target Start/End: Complemental strand, 53037279 - 53037191
Alignment:
Q  595 agcatagccaccgttgnnnnnnncttcctttcttcaacattattcgaatttcctaacaataacggaggttcattaaactcccattcatt 683  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037279 agcatagccaccgttgtttttttcttcctttcttcaacattattcgaatttcctaacaataacggaggttcattaaactcccattcatt 53037191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 656
Target Start/End: Original strand, 39996336 - 39996374
Alignment:
Q  618 cttcctttcttcaacattattcgaatttcctaacaataa 656  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  39996336 cttcctttcttcaacattatccaaatttcctaacaataa 39996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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