View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6577_low_21 (Length: 280)
Name: NF6577_low_21
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 26099449 - 26099214
Alignment:
| Q |
22 |
ggagcctcagtcaagattccgaagatacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcaactcacacaatcatcacccttcttc |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26099449 |
ggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttc |
26099350 |
T |
|
| Q |
122 |
attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
26099349 |
attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgt |
26099250 |
T |
|
| Q |
222 |
aacggaaggccatggccatgaacaagaaactcctcc |
257 |
Q |
| |
|
|| ||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
26099249 |
aatggatggccatggccacgaacaagaagctcctcc |
26099214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
| Q |
31 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
80 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
25224814 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25224863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
| Q |
31 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
80 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
25288970 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25289019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
| Q |
136 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
224 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| ||||||||||| |
|
|
| T |
25224928 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25225016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
| Q |
136 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
224 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| ||||||||||| |
|
|
| T |
25289084 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25289172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
| Q |
136 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
224 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| ||||||||||| |
|
|
| T |
25728320 |
tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25728232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
| Q |
31 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
80 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
25728434 |
gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca |
25728385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
| Q |
145 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
218 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| ||||||||||| |
|
|
| T |
25222655 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25222582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
| Q |
145 |
tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc |
218 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| ||||||||||| |
|
|
| T |
25286811 |
tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc |
25286738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
| Q |
136 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac |
224 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||||||| ||||||| || | |||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
25618044 |
tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac |
25618132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University