View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6577_low_22 (Length: 275)

Name: NF6577_low_22
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6577_low_22
NF6577_low_22
[»] chr2 (4 HSPs)
chr2 (133-243)||(11272507-11272617)
chr2 (156-249)||(1479466-1479559)
chr2 (127-201)||(33858646-33858720)
chr2 (135-203)||(13016050-13016118)
[»] chr5 (2 HSPs)
chr5 (135-245)||(36989004-36989114)
chr5 (135-180)||(40296118-40296163)
[»] chr3 (3 HSPs)
chr3 (110-212)||(53553625-53553727)
chr3 (121-243)||(1259279-1259401)
chr3 (121-243)||(37242567-37242689)
[»] chr1 (1 HSPs)
chr1 (135-240)||(32774127-32774232)
[»] chr6 (4 HSPs)
chr6 (121-237)||(1034282-1034399)
chr6 (121-243)||(18246532-18246654)
chr6 (128-258)||(2920929-2921059)
chr6 (152-201)||(10232781-10232830)
[»] chr4 (3 HSPs)
chr4 (121-243)||(16989583-16989705)
chr4 (135-237)||(2282226-2282328)
chr4 (152-225)||(50143549-50143622)
[»] chr7 (3 HSPs)
chr7 (134-243)||(31234744-31234853)
chr7 (121-237)||(42460087-42460203)
chr7 (140-212)||(21245198-21245270)
[»] chr8 (6 HSPs)
chr8 (147-234)||(8273822-8273909)
chr8 (121-203)||(9936413-9936495)
chr8 (155-212)||(42941248-42941305)
chr8 (155-243)||(36404084-36404172)
chr8 (155-201)||(37269863-37269909)
chr8 (151-212)||(30503004-30503065)
[»] scaffold0760 (1 HSPs)
scaffold0760 (155-201)||(1742-1788)
[»] scaffold0495 (1 HSPs)
scaffold0495 (152-201)||(9504-9553)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 11272617 - 11272507
Alignment:
Q  133 cgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaacc 232  Q
    ||||||||| || ||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  11272617 cgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaacc 11272518  T
Q  233 gctttgatttc 243  Q
    |||||||||||    
T  11272517 gctttgatttc 11272507  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 1479466 - 1479559
Alignment:
Q  156 ctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttcgtcaac 249  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||| |||||| |||| |||||||||||||| ||||||||    
T  1479466 ctctaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcagcgtccaatcccacgaaaccgctttgatctcgtcaac 1479559  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 33858646 - 33858720
Alignment:
Q  127 cagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctt 201  Q
    ||||| ||||||||| || ||||| || |||| ||||||||||||||||||||| |||||||| |||||| ||||    
T  33858646 cagccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagctttctt 33858720  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 13016050 - 13016118
Alignment:
Q  135 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatcttta 203  Q
    ||||||| || || ||||||||||| |||||||||||||||||||| ||||| ||||| | ||||||||    
T  13016050 ttcatcttctattaaggcactctctcggattccaagtccactcataaaagagaaaagaggttatcttta 13016118  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 36989114 - 36989004
Alignment:
Q  135 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 234  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    ||||||||| ||||||||    
T  36989114 ttcatctccttgttagacactctctaggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgc 36989015  T
Q  235 tttgatttcgt 245  Q
    |||||||||||    
T  36989014 tttgatttcgt 36989004  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 40296118 - 40296163
Alignment:
Q  135 ttcatctcctttttaggcactctctaggattccaagtccactcata 180  Q
    ||||||| || ||||| |||||| ||||||||||||||||||||||    
T  40296118 ttcatcttctatttagacactctttaggattccaagtccactcata 40296163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 53553625 - 53553727
Alignment:
Q  110 atagcatatccaaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctac 209  Q
    |||||| ||||||||  |||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  53553625 atagcagatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaatctac 53553724  T
Q  210 tca 212  Q
    |||    
T  53553725 tca 53553727  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 1259279 - 1259401
Alignment:
Q  121 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 220  Q
    ||||| |||||  |||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  1259279 aaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 1259378  T
Q  221 acccatgaaaccgctttgatttc 243  Q
    ||||| |||| |||||| |||||    
T  1259379 acccaagaaagcgctttaatttc 1259401  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 37242567 - 37242689
Alignment:
Q  121 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 220  Q
    ||||| |||||  |||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  37242567 aaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 37242666  T
Q  221 acccatgaaaccgctttgatttc 243  Q
    ||||| |||| |||||| |||||    
T  37242667 acccaagaaagcgctttaatttc 37242689  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 32774127 - 32774232
Alignment:
Q  135 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 234  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||  ||||||||||| ||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  235 tttgat 240  Q
    ||||||    
T  32774227 tttgat 32774232  T

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Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 121 - 237
Target Start/End: Complemental strand, 1034399 - 1034282
Alignment:
Q  121 aaaagccagccccgttcatctcctt-tttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtcca 219  Q
    ||||| |||| || ||||||||| | |||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||| |||||||  |||||    
T  1034399 aaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtcca 1034300  T
Q  220 aacccatgaaaccgcttt 237  Q
    |||||| |||||||||||    
T  1034299 aacccaagaaaccgcttt 1034282  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 18246532 - 18246654
Alignment:
Q  121 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 220  Q
    ||||| ||||| ||||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  18246532 aaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 18246631  T
Q  221 acccatgaaaccgctttgatttc 243  Q
    ||||| |||| |||||| |||||    
T  18246632 acccaagaaagcgctttaatttc 18246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 258
Target Start/End: Original strand, 2920929 - 2921059
Alignment:
Q  128 agccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatg 227  Q
    |||| ||||||||| || ||||| || ||||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||   |||||||||| |    
T  2920929 agccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaag 2921028  T
Q  228 aaaccgctttgatttcgtcaacaatctcctc 258  Q
    |||  ||||| || ||||| ||||| |||||    
T  2921029 aaagtgctttaatatcgtccacaatttcctc 2921059  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 10232830 - 10232781
Alignment:
Q  152 cactctctaggattccaagtccactcatagaagaggaaagaagctatctt 201  Q
    |||||| || |||||||| |||||||||| ||||||||||||||||||||    
T  10232830 cactctttaagattccaaatccactcataaaagaggaaagaagctatctt 10232781  T

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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 16989705 - 16989583
Alignment:
Q  121 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 220  Q
    ||||| ||||| ||||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  16989705 aaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaa 16989606  T
Q  221 acccatgaaaccgctttgatttc 243  Q
    ||||| |||| |||||| |||||    
T  16989605 acccaagaaagcgctttaatttc 16989583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 237
Target Start/End: Complemental strand, 2282328 - 2282226
Alignment:
Q  135 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 234  Q
    ||||||| || |||||||| || ||||| ||| ||||||| |||||||||||||| || ||| ||||||| ||||||| || ||| ||||| ||||||||    
T  2282328 ttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaaaccgc 2282229  T
Q  235 ttt 237  Q
    |||    
T  2282228 ttt 2282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 50143622 - 50143549
Alignment:
Q  152 cactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaaccca 225  Q
    |||||||| || ||||||  |||||| ||||||||| ||||||||||| | || |||||||| | |||||||||    
T  50143622 cactctcttgggttccaacaccactcgtagaagaggcaagaagctatcctcaatctactcagagaccaaaccca 50143549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 243
Target Start/End: Original strand, 31234744 - 31234853
Alignment:
Q  134 gttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccg 233  Q
    |||||||| || ||||| || ||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||| |||| ||    
T  31234744 gttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcg 31234843  T
Q  234 ctttgatttc 243  Q
    |||| |||||    
T  31234844 ctttaatttc 31234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 42460087 - 42460203
Alignment:
Q  121 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaa 220  Q
    ||||| |||| || ||||||| || ||||||||||||||||||||||||||| ||||||| |||||||| || |||||||||| ||| |||||| ||||     
T  42460087 aaaaggcagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatccac 42460186  T
Q  221 acccatgaaaccgcttt 237  Q
    ||||| || ||||||||    
T  42460187 acccaagacaccgcttt 42460203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 21245198 - 21245270
Alignment:
Q  140 ctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactca 212  Q
    ||||| ||||||||||||||||||||||| | |||||||||||| ||  ||||||| ||||| | ||||||||    
T  21245198 ctcctctttaggcactctctaggattccacgaccactcatagaatagacaagaagcaatcttgagcctactca 21245270  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 8273909 - 8273822
Alignment:
Q  147 ttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgc 234  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||   ||||||||||| ||||||||    
T  8273909 ttagacactctctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgc 8273822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 9936495 - 9936413
Alignment:
Q  121 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaagctatcttta 203  Q
    |||||||||| || ||||||| || |||||||||| |||||| ||||||||||||||||| |||||||| || ||||||||||    
T  9936495 aaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatcttta 9936413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 42941305 - 42941248
Alignment:
Q  155 tctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactca 212  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  |||||||    
T  42941305 tctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactca 42941248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 36404084 - 36404172
Alignment:
Q  155 tctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactcagtgtccaaacccatgaaaccgctttgatttc 243  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||| |  |||||||  | ||||| ||| || ||| ||||||||||    
T  36404084 tctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccactttgatttc 36404172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 37269863 - 37269909
Alignment:
Q  155 tctctaggattccaagtccactcatagaagaggaaagaagctatctt 201  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||    
T  37269863 tctctaggattccaagtccactcataaaagaggaaggaagctatctt 37269909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 30503004 - 30503065
Alignment:
Q  151 gcactctctaggattccaagtccactcatagaagaggaaagaagctatctttaacctactca 212  Q
    ||||||||| |||||||||  |||||| ||||||||| ||||||||||| | || |||||||    
T  30503004 gcactctctcggattccaacaccactcgtagaagaggtaagaagctatcctcaatctactca 30503065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 1742 - 1788
Alignment:
Q  155 tctctaggattccaagtccactcatagaagaggaaagaagctatctt 201  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||    
T  1742 tctctaggattccaagtccactcataaaagaggaaggaagctatctt 1788  T

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Target: scaffold0495 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 9553 - 9504
Alignment:
Q  152 cactctctaggattccaagtccactcatagaagaggaaagaagctatctt 201  Q
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T  9553 cactctttaagattccaaatccactcataaaagaggaaagaagctatctt 9504  T

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