View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_low_23 (Length: 270)
Name: NF6577_low_23
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 39656687 - 39656852
Alignment:
| Q |
91 |
ggtaaagatgaaaataatgctgaagaagatgaacaatttgtgaaggattttttgaaattgactttattgatatgtttacgttaaaa-aagtgtttttgat |
189 |
Q |
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| T |
39656687 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgat |
39656786 |
T |
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| Q |
190 |
gtttatgtggtagatgtttatgtagtttagctgtttctcgtgaggttgaagatgatatggaaaaat |
255 |
Q |
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| T |
39656787 |
gtttatgtggtagatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaat |
39656852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 34365080 - 34365208
Alignment:
| Q |
137 |
attttttgaaattgactttattgatatgtttacgttaaaa-aagtgtttttgatgtttatgtggtagatgtttatgtagtttagctgtttctcgtgaggt |
235 |
Q |
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| T |
34365080 |
attttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgatatttatgtggtagatgtttatgtagttttgctgtttctcgtgaggt |
34365179 |
T |
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| Q |
236 |
tgaagatgatatggaaaaattgatgatgt |
264 |
Q |
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| T |
34365180 |
tgaagatgatatgaaaaaatatatgatgt |
34365208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 3820671 - 3820504
Alignment:
| Q |
91 |
ggtaaagatgaaaataatgctgaagaagatgaacaatttgtgaaggattttttgaaattgactttattgatatgtttacgttaaaaaa---gtgtttttg |
187 |
Q |
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| T |
3820671 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaaagtgtttttg |
3820572 |
T |
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| Q |
188 |
atgtttatgtggtagatgtttatgtagtttagctgtttctcgtgaggttgaagatgatatggaaaaat |
255 |
Q |
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| T |
3820571 |
atgtttatgtggtagatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaat |
3820504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 39988265 - 39988373
Alignment:
| Q |
91 |
ggtaaagatgaaaataatgctgaagaagatgaacaatttgtgaaggattttttgaaattgactttattgatatgtttacgtt--aaaaaagtgtttttga |
188 |
Q |
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| T |
39988265 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaagtgtttttga |
39988364 |
T |
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| Q |
189 |
tgtttatgt |
197 |
Q |
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||||||||| |
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| T |
39988365 |
tgtttatgt |
39988373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 39988363 - 39988416
Alignment:
| Q |
202 |
gatgtttatgtagtttagctgtttctcgtgaggttgaagatgatatggaaaaat |
255 |
Q |
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| T |
39988363 |
gatgtttatgtagttttgctgtttcttgtgaggttgaagatgatatgaaaaaat |
39988416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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