View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6577_low_26 (Length: 249)

Name: NF6577_low_26
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6577_low_26
NF6577_low_26
[»] chr5 (6 HSPs)
chr5 (1-244)||(42582055-42582298)
chr5 (161-218)||(3280711-3280768)
chr5 (177-218)||(25461313-25461354)
chr5 (146-210)||(4014429-4014492)
chr5 (178-218)||(17258880-17258920)
chr5 (158-210)||(34160745-34160796)
[»] chr3 (6 HSPs)
chr3 (117-218)||(2128255-2128358)
chr3 (146-218)||(39602207-39602278)
chr3 (154-218)||(13804787-13804850)
chr3 (178-222)||(33120112-33120156)
chr3 (161-217)||(33883748-33883803)
chr3 (181-221)||(52619039-52619079)
[»] chr1 (12 HSPs)
chr1 (117-197)||(15784299-15784381)
chr1 (177-218)||(1509962-1510003)
chr1 (149-210)||(27820342-27820402)
chr1 (146-218)||(7136995-7137066)
chr1 (117-218)||(10744271-10744374)
chr1 (161-210)||(51695500-51695548)
chr1 (178-218)||(6292526-6292566)
chr1 (178-218)||(25479614-25479654)
chr1 (178-218)||(30815650-30815690)
chr1 (178-218)||(33975603-33975643)
chr1 (178-218)||(37593681-37593721)
chr1 (178-218)||(43338149-43338189)
[»] chr4 (1 HSPs)
chr4 (161-218)||(825487-825543)
[»] chr8 (6 HSPs)
chr8 (158-218)||(21653095-21653154)
chr8 (180-218)||(43368697-43368735)
chr8 (181-218)||(37353188-37353225)
chr8 (161-218)||(37353246-37353302)
chr8 (177-217)||(11121807-11121847)
chr8 (178-218)||(20672783-20672823)
[»] chr6 (2 HSPs)
chr6 (178-218)||(17770451-17770491)
chr6 (158-198)||(837233-837272)
[»] chr2 (5 HSPs)
chr2 (178-218)||(9595291-9595331)
chr2 (154-208)||(20952365-20952418)
chr2 (178-211)||(43985007-43985040)
chr2 (146-214)||(18179241-18179308)
chr2 (146-218)||(29316772-29316843)


Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42582055 - 42582298
Alignment:
1 gcagagacgagtttcatttaagaattattattgcatttttcaatttagtgaattaattacgccttgtttggttggataaatagtttaatttgaagtttat 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42582055 gcagagacgagtttcatgtaagaattattattgcatttttcaatttagtgaattaattacgccttgtttggttggataaatagtttaatttgaagtttat 42582154  T
101 agcaaatgtataagctaaaagataaaataaagttaaattgtttactaagctggttttattagctatctttgagaactttatgaaaataagctgaaaatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42582155 agcaaatgtataagctaaaagataaaataaagttaaattgtttactaagctggttttattagctatctttgagaactttatgaaaataagctgaaaatag 42582254  T
201 ttaatgaacatgtcataaattactgcattcaccatattcttgga 244  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
42582255 ttaatgaacatgtcataaactactgcattcaccattttattgga 42582298  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 3280768 - 3280711
Alignment:
161 agctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||||||||||||||||||||| || |||| || | ||||| |||||||||    
3280768 agctatctttgagaactttatgaaaataaactaaaaagagcttatgaagatgtcataa 3280711  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 25461354 - 25461313
Alignment:
177 tttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||||||||||||| || |||||||||||||||||    
25461354 tttatgaaaataagctgaaaacagctaatgaacatgtcataa 25461313  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 4014492 - 4014429
Alignment:
146 taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaaca 210  Q
    ||||||| ||| || ||||||||| |||||||| |||||||||||||||||| || | |||||||    
4014492 taagctgttttcataagctatcttggagaactt-atgaaaataagctgaaaacagcttatgaaca 4014429  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 17258920 - 17258880
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||| || | |||||||||||||||    
17258920 ttatgaaaataagctgaaaacagcttatgaacatgtcataa 17258880  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 34160745 - 34160796
Alignment:
158 attagctatctttgagaactttatgaaaataagctgaaaatagttaatgaaca 210  Q
    ||||| |||||| |||||||| |||||||||||||||||| |||| |||||||    
34160745 attagatatcttggagaactt-atgaaaataagctgaaaacagtttatgaaca 34160796  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 2128358 - 2128255
Alignment:
117 aaaagataaaataaagttaaattg-tttac--taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgt 213  Q
    |||||||||||||||||||||||| |||||  ||||||| ||| || ||| |||||| |||||  ||||||||||||||||||| || | ||||||||||    
2128358 aaaagataaaataaagttaaattgttttactgtaagctgttttcataagccatcttttagaac-gtatgaaaataagctgaaaacagcttatgaacatgt 2128260  T
214 cataa 218  Q
     ||||    
2128259 tataa 2128255  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 39602278 - 39602207
Alignment:
146 taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||| ||| || |||||||||||||||||| ||||||||||| |||||| | || |||||||||||||||    
39602278 taagctgttttcataagctatctttgagaactt-atgaaaataagttgaaaacaatttatgaacatgtcataa 39602207  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 13804787 - 13804850
Alignment:
154 ttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||| |||||||| ||| ||||||||| |||||| || | ||| |||||||||||    
13804787 ttttattagctatcgttgagaac-ttaagaaaataagttgaaaacagcttatggacatgtcataa 13804850  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 33120112 - 33120156
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataaatta 222  Q
    ||||||||||||||| || |||||| |||||| ||||||||||||    
33120112 ttatgaaaataagctaaagatagtttatgaacttgtcataaatta 33120156  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 33883803 - 33883748
Alignment:
161 agctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcata 217  Q
    ||||||||| |||||||| |||||||||||||||||| |  | ||||||||||||||    
33883803 agctatcttagagaactt-atgaaaataagctgaaaacaacttatgaacatgtcata 33883748  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 52619039 - 52619079
Alignment:
181 tgaaaataagctgaaaatagttaatgaacatgtcataaatt 221  Q
    |||||||||| ||||||||| | ||||||||||||||||||    
52619039 tgaaaataaggtgaaaatagcttatgaacatgtcataaatt 52619079  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 15784299 - 15784381
Alignment:
117 aaaagataaaataaagttaaattgtttac---taagctggttttattagctatctttgagaactttatgaaaataagctgaaaa 197  Q
    ||||| ||||||||||||||||||||| |   |||||||||||||| ||||||||| |||||| || |||||||||||| ||||    
15784299 aaaaggtaaaataaagttaaattgttttcgtataagctggttttataagctatcttggagaac-ttgtgaaaataagctaaaaa 15784381  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 1510003 - 1509962
Alignment:
177 tttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||||||||||||| || |||||||||||||||||    
1510003 tttatgaaaataagctgaaaacagctaatgaacatgtcataa 1509962  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 27820402 - 27820342
Alignment:
149 gctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaaca 210  Q
    |||| |||||| ||||||||| ||||| |||||||||||||||||||||||| | |||||||    
27820402 gctgtttttataagctatcttggagaa-tttatgaaaataagctgaaaatagcttatgaaca 27820342  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 7137066 - 7136995
Alignment:
146 taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||| ||| || ||||||||| |||||||| ||||||||||||||||||||  | ||||| |||||||||    
7137066 taagctgttttcataagctatcttggagaactt-atgaaaataagctgaaaataacttatgaatatgtcataa 7136995  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 10744271 - 10744374
Alignment:
117 aaaagataaaataaagttaaattgtttac---taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgt 213  Q
    |||||||||||||||||| |||||||| |   ||||||| ||| || |||| |||| |||||| |||| |||||||| |||||| || | |||||||||     
10744271 aaaagataaaataaagttgaattgttttcctataagctgttttcataagctgtcttagagaac-ttataaaaataagatgaaaacagcttatgaacatgc 10744369  T
214 cataa 218  Q
    |||||    
10744370 cataa 10744374  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 51695548 - 51695500
Alignment:
161 agctatctttgagaactttatgaaaataagctgaaaatagttaatgaaca 210  Q
    ||||||||| ||||| |||||||||||||||||||||||| | |||||||    
51695548 agctatcttggagaa-tttatgaaaataagctgaaaatagcttatgaaca 51695500  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 6292526 - 6292566
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||| || | |||||||||||||||    
6292526 ttatgaaaataagctgaaaacagcttatgaacatgtcataa 6292566  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 25479614 - 25479654
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||| |  |||||||||||||||||    
25479614 ttatgaaaataagctgaaaacaactaatgaacatgtcataa 25479654  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 30815690 - 30815650
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||| | || |||||||||||||||    
30815690 ttatgaaaataagctgaaaacattttatgaacatgtcataa 30815650  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 33975603 - 33975643
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
33975603 ttatgaaaataagctgaaaatagtttatggacatatcataa 33975643  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 37593721 - 37593681
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||| || | |||||||||||||||    
37593721 ttatgaaaataagctgaaaacagcttatgaacatgtcataa 37593681  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 43338149 - 43338189
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||| ||||||||||| | |||||||||||||||    
43338149 ttatgaaaataggctgaaaatagattatgaacatgtcataa 43338189  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 825543 - 825487
Alignment:
161 agctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||| || |||||||| |||||||||||||||||| ||||||||| ||||||||||    
825543 agctattttggagaactt-atgaaaataagctgaaaacagttaatgagcatgtcataa 825487  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 21653095 - 21653154
Alignment:
158 attagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||| |||| ||| ||||||||||||||||||||| | |||||| ||||||||    
21653095 attagctatcttggagagctt-atgaaaataagctgaaaatagcttatgaacgtgtcataa 21653154  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 43368735 - 43368697
Alignment:
180 atgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||| ||||||||| |||||||||||||||||    
43368735 atgaaaataagttgaaaatagctaatgaacatgtcataa 43368697  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 37353225 - 37353188
Alignment:
181 tgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||||| ||||| |||||||||    
37353225 tgaaaataagctgaaaatagtttatgaatatgtcataa 37353188  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 37353302 - 37353246
Alignment:
161 agctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||| ||| |||||||||| ||||||| |||| ||||| |||||||||    
37353302 agctatctttgagagctt-atgaaaataatctgaaaacagtttatgaatatgtcataa 37353246  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 11121807 - 11121847
Alignment:
177 tttatgaaaataagctgaaaatagttaatgaacatgtcata 217  Q
    |||||| ||||||||||||||||| |||||| |||||||||    
11121807 tttatggaaataagctgaaaatagataatgatcatgtcata 11121847  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 20672783 - 20672823
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    |||||||||||||||||||| || | |||||||||||||||    
20672783 ttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 17770491 - 17770451
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
17770491 ttatgaaaataagttgaaaatagtttatgaacatgtcataa 17770451  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 837272 - 837233
Alignment:
158 attagctatctttgagaactttatgaaaataagctgaaaat 198  Q
    |||||||||||| |||||||| |||||||||||||||||||    
837272 attagctatcttggagaactt-atgaaaataagctgaaaat 837233  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 9595291 - 9595331
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
9595291 ttatgaaaataagctgaaaatagttcatggacatgtcataa 9595331  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 20952365 - 20952418
Alignment:
154 ttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaa 208  Q
    ||||||||||||| || |||||||| ||||||||||| |||||| ||||||||||    
20952365 ttttattagctatattggagaactt-atgaaaataagttgaaaaaagttaatgaa 20952418  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 43985040 - 43985007
Alignment:
178 ttatgaaaataagctgaaaatagttaatgaacat 211  Q
    ||||||||||||||||||||||| ||||||||||    
43985040 ttatgaaaataagctgaaaatagataatgaacat 43985007  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 18179308 - 18179241
Alignment:
146 taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtc 214  Q
    ||||||| ||| || ||||||| | |||||||| | ||||||||||||||||||| ||||| |||||||    
18179308 taagctgctttcataagctatcctggagaactt-acgaaaataagctgaaaatagctaatggacatgtc 18179241  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 29316843 - 29316772
Alignment:
146 taagctggttttattagctatctttgagaactttatgaaaataagctgaaaatagttaatgaacatgtcataa 218  Q
    ||||||| ||| || ||||||||| |||||||| ||| |||||||||||||| |  | |||||||||||||||    
29316843 taagctgttttcatcagctatcttggagaactt-atggaaataagctgaaaagaacttatgaacatgtcataa 29316772  T

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