View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_low_27 (Length: 243)
Name: NF6577_low_27
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_27 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 25889040 - 25888817
Alignment:
| Q |
17 |
acacatgtacctatataaatacacatgctctgtagtctgtttagcacgttgcatacatccctcacagtatgggtatgggtcacttttcgatcaccattac |
116 |
Q |
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| T |
25889040 |
acacatgtacctatataaatacacatgctctgtactctgtttagcacgttgcatacatccctcacagcatgggt------cacttttccatcaccattac |
25888947 |
T |
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| Q |
117 |
tttcatttttctcttcttaactcgctaccaccgactcgttcatgccgattcact---tactaatgtacccccttattcctgtgacacctccaacccactt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25888946 |
tttcatttttctcttcttaactcgctaccaccgactcgttcatgccgattcacttgctactaatgtacccccttactcctgtgacacctccaacccactt |
25888847 |
T |
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| Q |
214 |
acaaaatcctttccattctgcaatctcaac |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
25888846 |
acaaaatcctttccattctgcaatctcaac |
25888817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 25929432 - 25929305
Alignment:
| Q |
116 |
ctttcatttttctcttcttaactcgctaccaccgactcgttcatgccgattcacttactaatgtacccccttattcctgtgacacctccaacccacttac |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| || || |||||||||||| ||||||||||||| |
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| T |
25929432 |
ctttcatttttctcttcctaactcgctaccaccgactcgttcatgccgattcaccaactcatgtacctccatactcctgtgacaccaccaacccacttac |
25929333 |
T |
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| Q |
216 |
aaaatcctttccattctgcaatctcaac |
243 |
Q |
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| T |
25929332 |
aaaatccttacccttctgcaatctcaac |
25929305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 25912968 - 25912841
Alignment:
| Q |
116 |
ctttcatttttctcttcttaactcgctaccaccgactcgttcatgccgattcacttactaatgtacccccttattcctgtgacacctccaacccacttac |
215 |
Q |
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|||||||||| |||||| ||||||||||||||| |||||||||||||||| ||| ||| |||||| ||||| |||||||||||||| ||||||| ||| |
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| T |
25912968 |
ctttcattttactcttcctaactcgctaccaccaactcgttcatgccgatccaccaactcttgtacctccttactcctgtgacacctcaaacccacgtac |
25912869 |
T |
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| Q |
216 |
aaaatcctttccattctgcaatctcaac |
243 |
Q |
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||||| ||||| || |||||||||||| |
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| T |
25912868 |
aaaattatttcccttttgcaatctcaac |
25912841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 25956231 - 25956358
Alignment:
| Q |
116 |
ctttcatttttctcttcttaactcgctaccaccgactcgttcatgccgattcacttactaatgtacccccttattcctgtgacacctccaacccacttac |
215 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||| ||| |||||||| || ||||| | | ||||||||||||| |
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| T |
25956231 |
ctttcatttttctcttcctaactcgctacaaccaactcgttcatgccgattcaccaactcttgttcccccttactcttgtgatatcaccaacccacttac |
25956330 |
T |
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| Q |
216 |
aaaatcctttccattctgcaatctcaac |
243 |
Q |
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|||||||| | | ||||||||||||||| |
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| T |
25956331 |
aaaatcctatactttctgcaatctcaac |
25956358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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