View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_low_3 (Length: 496)
Name: NF6577_low_3
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 2384724 - 2384352
Alignment:
| Q |
1 |
aatgggaatagcattgtatactagtgttttcggagttggaagctttgttagtgcattgatgattacacttgttgaagtttacacaagctcaaaaggaaca |
100 |
Q |
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| T |
2384724 |
aatgggaattgcattgtatacaagtgtttttggagttggaagctttgttagtgcattgatgattacacttgttgaagtatatacaagttcaaaaggaaca |
2384625 |
T |
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| Q |
101 |
ccaagttggttttctgatgatatggtcgaggcacgtttggataattactattggcttctagcttggttaagttcaattagcttattgttgtatacactat |
200 |
Q |
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| T |
2384624 |
ccaagttggttttctgatgatatggtcgaggcgcgtttggataattactattggcttctagcttggttaagttcaattagcttattgttgtatacactat |
2384525 |
T |
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| Q |
201 |
tgtgtaaatattactataataagagtgaatcagatagttaaaacttagttttannnnnnnctgatatagttttcaagtgtaattttatcacaaagtttgt |
300 |
Q |
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| T |
2384524 |
tgtgtaaatattactataataagagtgaatcagatagttaaaactgagttttatttttttctgatatagttttcaagtgtaattttatcacaaagtttgt |
2384425 |
T |
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| Q |
301 |
ggaacaagttaccattatatcatattaatataccagtaattgtatgatgttctttttgtaagaaggtaaactg |
373 |
Q |
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| T |
2384424 |
ggaacaagttaccattatatcatattaatataccagtaattgtatgatgttctttttgtaagaaggtaaactg |
2384352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 2384320 - 2384225
Alignment:
| Q |
382 |
taagatttaacacattcttatcctttttatgtacaattttaccttttcaatttggatttaattcatatatacacggttagtgaaaaagctttttac |
477 |
Q |
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| T |
2384320 |
taagatttaacacattcttatcctttttatgtacaattttaccttttcaatttggatttaattcatatatacacggttagtgaaaaagctttttac |
2384225 |
T |
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