View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6577_low_34 (Length: 216)

Name: NF6577_low_34
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6577_low_34
NF6577_low_34
[»] chr3 (35 HSPs)
chr3 (89-207)||(52114269-52114387)
chr3 (7-75)||(45103112-45103180)
chr3 (1-75)||(1801449-1801523)
chr3 (1-75)||(50524763-50524837)
chr3 (16-75)||(33689179-33689238)
chr3 (1-75)||(41753025-41753099)
chr3 (1-52)||(29031740-29031791)
chr3 (1-64)||(47492061-47492124)
chr3 (16-75)||(47492123-47492182)
chr3 (1-79)||(30580755-30580833)
chr3 (1-74)||(51046077-51046150)
chr3 (1-88)||(30734392-30734479)
chr3 (16-82)||(43139785-43139851)
chr3 (1-51)||(55223293-55223343)
chr3 (31-92)||(55223218-55223279)
chr3 (1-52)||(30476500-30476551)
chr3 (1-52)||(33689237-33689288)
chr3 (16-75)||(41752967-41753026)
chr3 (16-74)||(30580832-30580890)
chr3 (24-72)||(18321657-18321705)
chr3 (16-75)||(30734478-30734537)
chr3 (1-52)||(43139735-43139786)
chr3 (1-52)||(49418717-49418768)
chr3 (16-75)||(51046149-51046208)
chr3 (1-38)||(47677295-47677332)
chr3 (7-55)||(21024117-21024165)
chr3 (1-46)||(18321712-18321757)
chr3 (16-51)||(30476550-30476585)
chr3 (29-68)||(34060203-34060242)
chr3 (1-52)||(50550036-50550087)
chr3 (1-50)||(34060246-34060295)
chr3 (16-52)||(29031790-29031826)
chr3 (16-72)||(39057033-39057089)
chr3 (31-79)||(39429996-39430044)
chr3 (16-88)||(50549965-50550037)
[»] chr5 (39 HSPs)
chr5 (5-87)||(12913868-12913950)
chr5 (1-75)||(2953251-2953325)
chr5 (1-75)||(16971205-16971279)
chr5 (1-75)||(29699428-29699502)
chr5 (3-82)||(28818980-28819059)
chr5 (1-75)||(2093940-2094014)
chr5 (1-75)||(3899900-3899974)
chr5 (1-75)||(19655219-19655293)
chr5 (3-75)||(291160-291232)
chr5 (1-81)||(30117825-30117905)
chr5 (17-79)||(291096-291158)
chr5 (1-75)||(26662460-26662535)
chr5 (1-75)||(26934055-26934130)
chr5 (16-74)||(30117904-30117962)
chr5 (7-75)||(2356339-2356406)
chr5 (13-64)||(7009401-7009452)
chr5 (1-52)||(16439199-16439250)
chr5 (16-75)||(19598335-19598394)
chr5 (16-75)||(19655161-19655220)
chr5 (16-70)||(16439146-16439200)
chr5 (16-75)||(1638460-1638519)
chr5 (16-75)||(12913806-12913865)
chr5 (21-75)||(13312267-13312321)
chr5 (21-75)||(32485630-32485684)
chr5 (1-74)||(228411-228484)
chr5 (16-72)||(3180136-3180191)
chr5 (16-64)||(29699381-29699429)
chr5 (1-52)||(3180086-3180137)
chr5 (1-47)||(38134404-38134450)
chr5 (16-64)||(17849221-17849269)
chr5 (1-40)||(16802505-16802544)
chr5 (31-86)||(39031242-39031297)
chr5 (5-75)||(11983259-11983328)
chr5 (21-75)||(22083095-22083149)
chr5 (32-78)||(31147137-31147183)
chr5 (16-50)||(38134449-38134483)
chr5 (7-39)||(14167191-14167223)
chr5 (7-39)||(37325597-37325629)
chr5 (43-75)||(39777054-39777086)
[»] chr1 (52 HSPs)
chr1 (1-81)||(15220872-15220952)
chr1 (1-75)||(48993920-48993994)
chr1 (1-88)||(29371429-29371516)
chr1 (1-71)||(32540755-32540825)
chr1 (1-74)||(29179601-29179674)
chr1 (1-75)||(5995430-5995504)
chr1 (1-72)||(33219634-33219705)
chr1 (1-75)||(17127567-17127641)
chr1 (7-75)||(49444916-49444984)
chr1 (1-88)||(4609057-4609135)
chr1 (16-75)||(29179673-29179732)
chr1 (16-75)||(37155049-37155108)
chr1 (16-82)||(44706860-44706926)
chr1 (1-54)||(8337875-8337928)
chr1 (1-52)||(1819515-1819566)
chr1 (16-75)||(9157313-9157372)
chr1 (16-75)||(21630045-21630104)
chr1 (16-75)||(46932000-46932059)
chr1 (1-52)||(47303456-47303507)
chr1 (16-75)||(48993993-48994052)
chr1 (16-81)||(28395634-28395699)
chr1 (1-54)||(28928803-28928856)
chr1 (23-88)||(36290490-36290555)
chr1 (7-52)||(38674531-38674576)
chr1 (1-46)||(45728348-45728393)
chr1 (1-40)||(741540-741579)
chr1 (1-40)||(1091582-1091621)
chr1 (1-52)||(37155107-37155158)
chr1 (16-71)||(45728294-45728349)
chr1 (2-52)||(48604973-48605023)
chr1 (1-46)||(46333978-46334023)
chr1 (16-75)||(1091620-1091679)
chr1 (16-75)||(5995372-5995431)
chr1 (16-75)||(32540824-32540883)
chr1 (1-40)||(34062270-34062309)
chr1 (16-75)||(48498418-48498477)
chr1 (1-54)||(5694914-5694966)
chr1 (1-46)||(9157371-9157416)
chr1 (1-54)||(48498476-48498529)
chr1 (1-52)||(44706809-44706861)
chr1 (3-74)||(12441018-12441089)
chr1 (16-75)||(17127640-17127699)
chr1 (25-75)||(9884844-9884894)
chr1 (26-75)||(31342266-31342315)
chr1 (17-54)||(32157602-32157639)
chr1 (22-75)||(46932064-46932116)
chr1 (29-70)||(47303666-47303707)
chr1 (16-52)||(741578-741614)
chr1 (16-88)||(4608986-4609058)
chr1 (25-61)||(9379835-9379871)
chr1 (1-29)||(36290456-36290484)
chr1 (16-52)||(38674579-38674615)
[»] scaffold0586 (2 HSPs)
scaffold0586 (1-75)||(7050-7124)
scaffold0586 (16-75)||(7123-7181)
[»] chr7 (28 HSPs)
chr7 (1-75)||(42628356-42628430)
chr7 (1-75)||(4290606-4290680)
chr7 (1-75)||(11016930-11017004)
chr7 (3-75)||(48000697-48000769)
chr7 (1-75)||(38975866-38975940)
chr7 (9-75)||(41945924-41945990)
chr7 (20-75)||(4290548-4290603)
chr7 (16-75)||(11016872-11016931)
chr7 (16-75)||(34854771-34854830)
chr7 (16-75)||(38975808-38975867)
chr7 (1-72)||(48000798-48000869)
chr7 (1-59)||(15027603-15027661)
chr7 (19-75)||(45231929-45231985)
chr7 (16-75)||(27028731-27028790)
chr7 (5-54)||(4649387-4649436)
chr7 (19-75)||(41018307-41018363)
chr7 (16-75)||(27028869-27028928)
chr7 (1-52)||(41018254-41018305)
chr7 (1-46)||(27028825-27028870)
chr7 (1-54)||(29053338-29053391)
chr7 (1-54)||(34854719-34854772)
chr7 (16-60)||(22764776-22764820)
chr7 (1-40)||(7671949-7671988)
chr7 (25-61)||(43500001-43500037)
chr7 (1-38)||(10419519-10419556)
chr7 (52-81)||(25001391-25001420)
chr7 (11-60)||(35303250-35303299)
chr7 (3-75)||(6225529-6225600)
[»] chr4 (42 HSPs)
chr4 (1-75)||(42375071-42375145)
chr4 (1-81)||(47661903-47661983)
chr4 (1-81)||(23444266-23444346)
chr4 (1-75)||(6271763-6271837)
chr4 (1-75)||(51265506-51265580)
chr4 (1-75)||(53954671-53954745)
chr4 (1-64)||(25818387-25818450)
chr4 (16-82)||(23444345-23444411)
chr4 (1-75)||(35682227-35682301)
chr4 (1-54)||(40789240-40789293)
chr4 (16-75)||(3862622-3862681)
chr4 (16-75)||(3871379-3871438)
chr4 (16-75)||(51265448-51265507)
chr4 (2-52)||(47404611-47404661)
chr4 (1-66)||(47762669-47762734)
chr4 (16-75)||(6271705-6271764)
chr4 (2-81)||(44379992-44380071)
chr4 (1-52)||(50384131-50384182)
chr4 (1-52)||(52028610-52028661)
chr4 (5-51)||(55090023-55090069)
chr4 (7-52)||(26186042-26186087)
chr4 (1-52)||(24006096-24006147)
chr4 (16-75)||(26186090-26186149)
chr4 (16-75)||(30861850-30861909)
chr4 (24-74)||(5048884-5048934)
chr4 (26-75)||(30709986-30710035)
chr4 (1-74)||(38714884-38714957)
chr4 (1-42)||(45591446-45591487)
chr4 (16-64)||(47661856-47661904)
chr4 (1-40)||(31430499-31430538)
chr4 (16-75)||(35682169-35682228)
chr4 (32-93)||(19184488-19184549)
chr4 (52-85)||(54716351-54716384)
chr4 (18-74)||(44379934-44379990)
chr4 (1-40)||(28693961-28694000)
chr4 (16-51)||(55090072-55090107)
chr4 (3-76)||(49469911-49469983)
chr4 (1-29)||(30861823-30861851)
chr4 (25-61)||(31846896-31846932)
chr4 (24-60)||(41306636-41306672)
chr4 (16-52)||(42375036-42375072)
chr4 (22-86)||(47762600-47762664)
[»] chr2 (28 HSPs)
chr2 (1-75)||(14229356-14229430)
chr2 (1-75)||(6217227-6217301)
chr2 (15-79)||(33018620-33018684)
chr2 (1-75)||(6722012-6722086)
chr2 (1-75)||(16514485-16514559)
chr2 (1-75)||(38933648-38933722)
chr2 (1-88)||(14470582-14470669)
chr2 (1-75)||(24115981-24116055)
chr2 (1-75)||(29508693-29508768)
chr2 (17-75)||(9173058-9173116)
chr2 (3-81)||(14892323-14892401)
chr2 (1-75)||(37961767-37961841)
chr2 (7-88)||(32545855-32545936)
chr2 (1-68)||(29925580-29925647)
chr2 (1-51)||(15011341-15011391)
chr2 (1-52)||(2828645-2828696)
chr2 (3-46)||(2894026-2894069)
chr2 (16-75)||(16514427-16514486)
chr2 (16-75)||(29508767-29508826)
chr2 (1-50)||(8534207-8534256)
chr2 (16-64)||(15011294-15011342)
chr2 (29-92)||(1945398-1945461)
chr2 (24-75)||(32545789-32545840)
chr2 (11-51)||(14464582-14464622)
chr2 (1-40)||(37762039-37762078)
chr2 (16-89)||(24115909-24115982)
chr2 (16-64)||(6721965-6722013)
chr2 (16-60)||(37762077-37762121)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-87)||(19113-19199)
[»] chr8 (32 HSPs)
chr8 (1-75)||(5033222-5033296)
chr8 (1-75)||(33841594-33841668)
chr8 (1-75)||(35440972-35441046)
chr8 (1-74)||(10086818-10086891)
chr8 (16-88)||(43844545-43844617)
chr8 (1-88)||(6296666-6296753)
chr8 (17-75)||(5667100-5667158)
chr8 (3-75)||(5667160-5667232)
chr8 (16-75)||(8243464-8243523)
chr8 (16-75)||(8796425-8796484)
chr8 (16-75)||(35441045-35441104)
chr8 (1-75)||(45191130-45191204)
chr8 (16-75)||(5033164-5033223)
chr8 (1-52)||(34229702-34229753)
chr8 (1-75)||(8796483-8796557)
chr8 (16-90)||(34229629-34229703)
chr8 (1-74)||(39851016-39851089)
chr8 (1-61)||(31159912-31159972)
chr8 (16-75)||(2581828-2581887)
chr8 (16-75)||(10086760-10086819)
chr8 (16-75)||(22649848-22649907)
chr8 (16-75)||(33841667-33841726)
chr8 (7-74)||(43844475-43844542)
chr8 (1-51)||(8243415-8243465)
chr8 (3-53)||(35031639-35031689)
chr8 (1-52)||(34541829-34541880)
chr8 (1-75)||(4958660-4958733)
chr8 (3-55)||(37618750-37618802)
chr8 (8-55)||(1880306-1880353)
chr8 (3-54)||(13470042-13470093)
chr8 (17-54)||(39139838-39139875)
chr8 (31-75)||(35031706-35031750)
[»] chr6 (16 HSPs)
chr6 (1-79)||(24618600-24618678)
chr6 (1-72)||(12343161-12343232)
chr6 (1-81)||(13043518-13043598)
chr6 (16-75)||(24587464-24587523)
chr6 (7-75)||(17750969-17751037)
chr6 (15-75)||(24975755-24975815)
chr6 (1-54)||(10521873-10521926)
chr6 (17-90)||(17750891-17750963)
chr6 (1-52)||(551191-551242)
chr6 (16-82)||(551241-551307)
chr6 (1-52)||(2315330-2315381)
chr6 (42-82)||(13043444-13043484)
chr6 (14-75)||(7384491-7384552)
chr6 (16-61)||(13043474-13043519)
chr6 (1-37)||(24587522-24587558)
chr6 (16-52)||(31654331-31654367)
[»] scaffold0161 (2 HSPs)
scaffold0161 (1-75)||(27223-27297)
scaffold0161 (19-75)||(27299-27355)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-75)||(49706-49780)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-52)||(63818-63869)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-46)||(2274-2319)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-46)||(2274-2319)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-52)||(2913-2964)
[»] scaffold0536 (1 HSPs)
scaffold0536 (1-61)||(4909-4969)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 52114269 - 52114387
Alignment:
Q  89 aaaatatatatgctgatnnnnnnntctttcaaacaattctactaaataatatcgtagattatatgcaaatgaaaattttataaaattttatcagttaatc 188  Q
    |||||||||||||||||       ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52114269 aaaatatatatgctgatagaaaaatctatcatacaattctactaaataatatcgtagattatatgcagatgaaaattttataaaattttatcagttaatc 52114368  T
Q  189 ttttgactaagagtataat 207  Q
    |||||||||||||||||||    
T  52114369 ttttgactaagagtataat 52114387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 45103180 - 45103112
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45103180 tctctctttcacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcac 45103112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 1801523 - 1801449
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  1801523 tgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 1801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 50524763 - 50524837
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  50524763 tgtttctctctctttcacaagcatcgtaacattgtgattgactaatatcaccaatgtcactcaactctatgtcac 50524837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 33689238 - 33689179
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33689238 cacaagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcac 33689179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41753025 - 41753099
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  41753025 tgtttctttctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcac 41753099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29031791 - 29031740
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29031791 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 29031740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47492124 - 47492061
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  47492124 tgtttctctctttttcacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 47492123 - 47492182
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  47492123 cacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcac 47492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30580833 - 30580755
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaa 79  Q
    ||||||| ||||||||||||  ||||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||    
T  30580833 tgtttctatctctttcacaaatattgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcactcaa 30580755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51046150 - 51046077
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||| |||||||| ||| ||||||||||||||    
T  51046150 tgtttctctctctttcacaaacattgtgacattatgattgatcaatgtcaccaatatcatccaactctatgtca 51046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30734479 - 30734392
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||| |||||||||||||||||||||||||||| |  |||| ||| |||||||||| ||||||||||||| ||| | ||||||    
T  30734479 tgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagttctatcc 30734392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 43139785 - 43139851
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaata 82  Q
    ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||| ||||||    
T  43139785 cacaagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaaata 43139851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 55223293 - 55223343
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcac 51  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55223293 tgtttctctctctttcacaagcattgtgacattatgattgaccaatatcac 55223343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 55223279 - 55223218
Alignment:
Q  31 attgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatccaaaa 92  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagtgctatccaaaa 55223218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30476551 - 30476500
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  30476551 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33689237 - 33689288
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  33689237 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 33689288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 41753026 - 41752967
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  41753026 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 41752967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 30580832 - 30580890
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    |||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  30580832 cacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 18321705 - 18321657
Alignment:
Q  24 ttgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 72  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  18321705 ttgtgacattgtgattgaccaatgtcaccaatatcacccaactctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 30734478 - 30734537
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||| ||| |||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  30734478 cacaagtattatgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30734537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43139786 - 43139735
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  43139786 tgtttctctctctttcacaagcattctgacattgtgattgaccgatgtcacc 43139735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 49418768 - 49418717
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  49418768 tgtttctctctctttcacaaatattatgacattgtgattgaccaatatcacc 49418717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 51046149 - 51046208
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||| || ||||||||||| ||||| |||||||||||| |||||||||||||||    
T  51046149 cacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaactctatgtcac 51046208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47677332 - 47677295
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgat 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47677332 tgtttctctctctttcacaagcattgtgacattgtgat 47677295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 21024165 - 21024117
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaat 55  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  21024165 tctctctttcacaagaattgtgacattgtgtttgaccaatgtcaccaat 21024117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18321712 - 18321757
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||||    
T  18321712 tgtttttctctttttcacatgcattgtgacattgtgattgaccaat 18321757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 30476550 - 30476585
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcac 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  30476550 cacaagcattgtgacattgtgattgaccaatgtcac 30476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 34060242 - 34060203
Alignment:
Q  29 acattgtgattgaccaatatcaccaatgtcacccaactct 68  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  34060242 acattatgattgaccaatatcaccaatgtcatccaactct 34060203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 50550036 - 50550087
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||| |||| ||||||| ||||||| |||| |||||    
T  50550036 tgtttctctctctttcacaaacattatgacattatgattgatcaatgtcacc 50550087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34060246 - 34060295
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatca 50  Q
    ||||| ||||||||||| ||| ||||||| |||||||||||| |||||||    
T  34060246 tgtttttctctctttcataagtattgtgatattgtgattgacaaatatca 34060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 29031790 - 29031826
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  29031790 cacaaacattgtgacattgtaattgaccaatatcacc 29031826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 39057033 - 39057089
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 72  Q
    ||||| ||| |||||||||| |||| || || |||||||||||||| ||||||||||    
T  39057033 cacaaacatcgtgacattgtcattgtccgatgtcaccaatgtcacctaactctatgt 39057089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 39429996 - 39430044
Alignment:
Q  31 attgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaa 79  Q
    |||||| ||| ||||| |||| |||||||||||||| ||||||||||||    
T  39429996 attgtgcttggccaatgtcactaatgtcacccaactttatgtcactcaa 39430044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 50550037 - 50549965
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    |||||||||||| | ||||||||||  |||| |||||||| ||||||| || ||| |||||||| || |||||    
T  50550037 cacaagcattgtaatattgtgattggtcaatgtcaccaatatcacccagctttatatcactcaagtattatcc 50549965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 12913868 - 12913950
Alignment:
Q  5 tctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatc 87  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  12913868 tctctctctttcacaagcattatgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaaatattatc 12913950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2953251 - 2953325
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  2953251 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 2953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16971205 - 16971279
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  16971205 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 16971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29699428 - 29699502
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  29699428 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29699502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 28818980 - 28819059
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaata 82  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| ||||||    
T  28818980 tttctctctctttcacaagcattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaaata 28819059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2094014 - 2093940
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  2094014 tgtttctctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 2093940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3899900 - 3899974
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| |||||    
T  3899900 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 3899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19655219 - 19655293
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||    
T  19655219 tgtttctctctctttcacaagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcac 19655293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 291160 - 291232
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  291160 tttctttctctttcacaaacattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcac 291232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30117905 - 30117825
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||| ||||| || |||||||||||||||||||  |||||||||||||||||||||||||||| |||| |||||    
T  30117905 tgtttctctctttttcataaacattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaaat 30117825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 291158 - 291096
Alignment:
Q  17 acaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaa 79  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  291158 acaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaa 291096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26662460 - 26662535
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtga-ttgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||| |||||    
T  26662460 tgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcac 26662535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26934055 - 26934130
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtga-ttgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||| ||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||| |||||    
T  26934055 tgtttctctctttttcacaagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcac 26934130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 30117904 - 30117962
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  30117904 cacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgtca 30117962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 2356339 - 2356406
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||    
T  2356339 tctctctttcataagcattgtgacat-gtgattggccaatgtcaccaatgtcatccaactctatgtcac 2356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 7009401 - 7009452
Alignment:
Q  13 tttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  7009401 tttcacaagcattgtgatattgtgattgaccaatatcaccaatgtcatccaa 7009452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16439199 - 16439250
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  16439199 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 16439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 19598394 - 19598335
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||||    
T  19598394 cacaagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcac 19598335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 19655220 - 19655161
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  19655220 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 19655161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 16439200 - 16439146
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctat 70  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  16439200 cacaagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctat 16439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 1638519 - 1638460
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||| ||||    
T  1638519 cacaaacattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcac 1638460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 12913865 - 12913806
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||    
T  12913865 cacaagaattgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcac 12913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 13312321 - 13312267
Alignment:
Q  21 gcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||    
T  13312321 gcattgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcac 13312267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 32485630 - 32485684
Alignment:
Q  21 gcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgtgtcac 32485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 228411 - 228484
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    ||||| ||||||||| ||||||||| |||||||||||||||| ||| ||| |||| | |||||||| |||||||    
T  228411 tgtttttctctcttttacaagcattttgacattgtgattgacaaatctcatcaatattacccaactttatgtca 228484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 3180136 - 3180191
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 72  Q
    ||||||||||||| ||||||||||||||||| |||||||||| | ||||||||||||    
T  3180136 cacaagcattgtggcattgtgattgaccaatgtcaccaatgtta-ccaactctatgt 3180191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29699429 - 29699381
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  29699429 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3180137 - 3180086
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||| |||||    
T  3180137 tgtttctctctctttcacaaacattgtgacattatgattgatcaatgtcacc 3180086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38134450 - 38134404
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaata 47  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  38134450 tgtttctttctctttcactagcattgtgacattgtgattggccaata 38134404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 17849221 - 17849269
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    ||||||||||| || |||||||||||||||| |||||||| ||||||||    
T  17849221 cacaagcattgcgatattgtgattgaccaatgtcaccaatatcacccaa 17849269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16802505 - 16802544
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  16802505 tgtttctctctcttttacaagcattgtgacattctgattg 16802544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 39031242 - 39031297
Alignment:
Q  31 attgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactat 86  Q
    ||||||||||| || | ||||||||||||||| |||||||||||  ||||||||||    
T  39031242 attgtgattgatcagtgtcaccaatgtcaccccactctatgtcatccaaatactat 39031297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 11983328 - 11983259
Alignment:
Q  5 tctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| || |||  ||||||||||| |||||||||||| |||||||| ||| |||| ||||||||||    
T  11983328 tctctctctctctcaaagattgtgacattttgattgaccaatgtcaccaatatca-ccaattctatgtcac 11983259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 22083095 - 22083149
Alignment:
Q  21 gcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| ||| | ||||||||||||||  ||||||||| |||||||||||||    
T  22083095 gcattgtgaaattataattgaccaatatcattaatgtcaccaaactctatgtcac 22083149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 31147183 - 31147137
Alignment:
Q  32 ttgtgattgaccaatatcaccaatgtcacccaactctatgtcactca 78  Q
    ||||||||| ||||||| | ||||||||| |||||||||||||||||    
T  31147183 ttgtgattggccaatattatcaatgtcactcaactctatgtcactca 31147137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 38134449 - 38134483
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatca 50  Q
    ||||||||||||||||||||||||| |||||||||    
T  38134449 cacaagcattgtgacattgtgattggccaatatca 38134483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 14167223 - 14167191
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgatt 39  Q
    ||||||||||||||| |||||||||||||||||    
T  14167223 tctctctttcacaaggattgtgacattgtgatt 14167191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 37325629 - 37325597
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgatt 39  Q
    ||||||||||||||| |||||||||||||||||    
T  37325629 tctctctttcacaaggattgtgacattgtgatt 37325597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 39777086 - 39777054
Alignment:
Q  43 caatatcaccaatgtcacccaactctatgtcac 75  Q
    |||| ||||||||||||||||||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcac 39777054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 52)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15220872 - 15220952
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  15220872 tgtttctctctctttcacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaaat 15220952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 48993994 - 48993920
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  48993994 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48993920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29371429 - 29371516
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||||| ||| | ||||||    
T  29371429 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagtgctatcc 29371516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32540825 - 32540755
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatg 71  Q
    |||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  32540825 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29179674 - 29179601
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    ||||||||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||||||||||    
T  29179674 tgtttctctctctttcacaagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5995430 - 5995504
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| |||||||||||| |||||||||||||||    
T  5995430 tgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcac 5995504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33219634 - 33219705
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 72  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||    
T  33219634 tgtttttctctctttcacaagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactctatgt 33219705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17127641 - 17127567
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||| ||||||||| |||||||| ||||    
T  17127641 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcac 17127567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 49444984 - 49444916
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||| ||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||    
T  49444984 tctctctctcacaagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcac 49444916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4609057 - 4609135
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||| ||| ||||||||    
T  4609057 tgtttctctctctttcacaagcattgtgacattgtgattgacca---------atgtcacccaactctatgtcacacaagtactatcc 4609135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29179673 - 29179732
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  29179673 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 29179732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 37155108 - 37155049
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  37155108 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcac 37155049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 44706860 - 44706926
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaata 82  Q
    ||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  44706860 cacaagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaata 44706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8337928 - 8337875
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  8337928 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcaccaa 8337875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1819566 - 1819515
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  1819566 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcacc 1819515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 9157372 - 9157313
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||    
T  9157372 cacaagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 9157313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 21630104 - 21630045
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||| ||||||||    
T  21630104 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 46932059 - 46932000
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  46932059 cacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 46932000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47303456 - 47303507
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  47303456 tgtttctctctctttcacaaacattgtgacattgtgattgaccaatgtcacc 47303507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 48993993 - 48994052
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||    
T  48993993 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 48994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28395699 - 28395634
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    |||||||||||||||||||||||||  |||| ||||||||||||| ||||||||||| || |||||    
T  28395699 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaaat 28395634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28928856 - 28928803
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  28928856 tgtttctctctctttcacaagcactgtgacattgtgattggccaatgtcaccaa 28928803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 36290490 - 36290555
Alignment:
Q  23 attgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||||||||||||  ||||  ||||||||||||||||||||||||||| ||| ||||||||    
T  36290490 attgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagtactatcc 36290555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 38674576 - 38674531
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  38674576 tctctctttcacaagcattgtgacattgtgattggccaatatcacc 38674531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45728348 - 45728393
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  45728348 tgtttctctctctttcacaagcattatgacattgtgattgaccaat 45728393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 741579 - 741540
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  741579 tgtttctctctctttcacaagcattgtgacattgtgattg 741540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1091621 - 1091582
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1091621 tgtttctctctctttcacaagcattgtgacattgtgattg 1091582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37155107 - 37155158
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  37155107 tgtttctctctctttcacaagtattgtgacattgtgattggccaatgtcacc 37155158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 45728349 - 45728294
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatg 71  Q
    |||||||||||||| ||||||||||  ||||||||||||| |||||||||||||||    
T  45728349 cacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 48605023 - 48604973
Alignment:
Q  2 gtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  48605023 gtttctctctctttcacaaatattgtgacattgtgattgaccaatgtcacc 48604973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 46334023 - 46333978
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  46334023 tgtttttctctctttcacaagcattgtgacattgtgattggccaat 46333978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 1091620 - 1091679
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| |||||||||||||||||||  |||  |||||||| |||||||||||||||||||    
T  1091620 cacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcac 1091679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5995431 - 5995372
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| | |||||||||| | |||||||||||||    
T  5995431 cacaagcattgtggcattgtgattggccaatgttaccaatgtcatcaaactctatgtcac 5995372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 32540824 - 32540883
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||| ||||||||||||  |||| |||||||||||| |||| ||||||||||    
T  32540824 cacaagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcac 32540883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34062270 - 34062309
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  34062270 tgtttctctctctttcacaaacattgtgacattgtgattg 34062309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 48498477 - 48498418
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| |||||||  ||| |||||||||||| |||| |||||||||||||||||||||||    
T  48498477 cacaaacattgtggtattatgattgaccaatgtcacaaatgtcacccaactctatgtcac 48498418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5694966 - 5694914
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||||||||||||||||||||||| | | |||||||||||||||| |||||||    
T  5694966 tgtttctctctctttcacaagcatt-taatattgtgattgaccaatgtcaccaa 5694914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9157371 - 9157416
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||    
T  9157371 tgtttctctctctttctcaagcattgtgatattgtgattgatcaat 9157416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48498476 - 48498529
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    |||||||||||||||||||||||| || ||||||||||||  |||| |||||||    
T  48498476 tgtttctctctctttcacaagcatggtaacattgtgattggtcaatgtcaccaa 48498529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 44706861 - 44706809
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgaca-ttgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||| |||||    
T  44706861 tgtttctctctctttcacaagcattgtggcatttgtgattggccaatgtcacc 44706809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 12441018 - 12441089
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    |||| |||||||| ||||| ||| |||||||||||||  |||||  ||||||||||||| || |||||||||    
T  12441018 tttccctctcttttacaaggattatgacattgtgattagccaatgccaccaatgtcaccaaattctatgtca 12441089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 17127640 - 17127699
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||| ||||||  |||| |||| ||||||||| |||||||| ||||    
T  17127640 cacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaactctatatcac 17127699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 9884894 - 9884844
Alignment:
Q  25 tgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||| ||||||||| |||||||||||||| | | |||||||||    
T  9884894 tgtgacattgtggttgaccaatgtcaccaatgtcaccaaccactatgtcac 9884844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 31342315 - 31342266
Alignment:
Q  26 gtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||| ||||| ||| |  |||||||||||||||||||||    
T  31342315 gtgacattgtgattggccaatgtcatcggtgtcacccaactctatgtcac 31342266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 32157602 - 32157639
Alignment:
Q  17 acaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  32157602 acaagcattgtgacactgtgattgaccaatgtcaccaa 32157639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 46932064 - 46932116
Alignment:
Q  22 cattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||| |||||||||||  |||| |||||||||||| |||||||||||||||    
T  46932064 cattgtggcattgtgattggtcaatgtcaccaatgtca-ccaactctatgtcac 46932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 47303666 - 47303707
Alignment:
Q  29 acattgtgattgaccaatatcaccaatgtcacccaactctat 70  Q
    |||||||||  |||||||||||||||||||||| ||||||||    
T  47303666 acattgtgacagaccaatatcaccaatgtcacctaactctat 47303707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 741578 - 741614
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  741578 cacaagcattgtgacattgtgatcgaccaatgtcacc 741614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 4609058 - 4608986
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||| ||||||||||||||||| |  |||| ||||| |||||||||||||| || |||| ||| | ||||||    
T  4609058 cacaaacattgtgacattgtgatgggtcaatgtcaccgatgtcacccaactccatatcacacaagtgctatcc 4608986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 9379871 - 9379835
Alignment:
Q  25 tgtgacattgtgattgaccaatatcaccaatgtcacc 61  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  9379871 tgtgacattgtggttggccaatatcaccaatgtcacc 9379835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36290484 - 36290456
Alignment:
Q  1 tgtttctctctctttcacaagcattgtga 29  Q
    |||||||||||||||||||||||||||||    
T  36290484 tgtttctctctctttcacaagcattgtga 36290456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 38674579 - 38674615
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||| |||||| |||||||||||    
T  38674579 cacaagcattgtgacattatgattggccaatatcacc 38674615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7124 - 7050
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  7124 tgtttctctctctttcacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 7123 - 7181
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  7123 cacaagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcac 7181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42628356 - 42628430
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42628356 tgtttctctctctttcacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcac 42628430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4290606 - 4290680
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  4290606 tgtttctctctctttcacaagaattgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcac 4290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11016930 - 11017004
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  11016930 tgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 11017004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 48000769 - 48000697
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |||||||    
T  48000769 tttctctctctttcacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcac 48000697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38975866 - 38975940
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||| |||| | ||||| |||| |||||||||||||| |||||||||||||    
T  38975866 tgtttctctctctttcacaagcattgtggcattataattgatcaatgtcaccaatgtcacctaactctatgtcac 38975940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 41945924 - 41945990
Alignment:
Q  9 tctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  41945924 tctctttcacaagcattgtaacattgtgattgaccaatattaccaatgtcactcaactttatgtcac 41945990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 4290603 - 4290548
Alignment:
Q  20 agcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  4290603 agcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcac 4290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 11016931 - 11016872
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  11016931 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 11016872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 34854771 - 34854830
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  34854771 cacaaacattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcac 34854830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 38975867 - 38975808
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||    
T  38975867 cacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcac 38975808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 48000798 - 48000869
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 72  Q
    |||||||||||||||||||  ||||||| |||||||||||  |||| |||||||||||||||||||||||||    
T  48000798 tgtttctctctctttcacagacattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgt 48000869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15027603 - 15027661
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtca 59  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||    
T  15027603 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtca 15027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 45231929 - 45231985
Alignment:
Q  19 aagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  45231929 aagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 45231985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 27028790 - 27028731
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||    
T  27028790 cacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcac 27028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 4649387 - 4649436
Alignment:
Q  5 tctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  4649387 tctctctctttcacaagcatcgtgacattgtgattgaccaatgtcaccaa 4649436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 41018307 - 41018363
Alignment:
Q  19 aagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||    
T  41018307 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 41018363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 27028869 - 27028928
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| ||||||||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27028869 cacaaacattgtgacattgtgattgaccaatgtcaccaacatcacccaagtctatgtcac 27028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41018305 - 41018254
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  41018305 tgtttctctctctttcacaagcattgggacattgtgattggccaatgtcacc 41018254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27028870 - 27028825
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||    
T  27028870 tgtttctctctctttcagaagcattgtgacattgtgattgtccaat 27028825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29053391 - 29053338
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  29053391 tgtttctctctctttcacaagcattgaggcattgtgattggccaatgtcaccaa 29053338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34854772 - 34854719
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||    
T  34854772 tgtttctatctctttcacaagcattgtggcattgtgattggccaatgtcaccaa 34854719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 22764776 - 22764820
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcac 60  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  22764776 cacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7671988 - 7671949
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  7671988 tgtttctctctctttcacaagcattgtggcattgtgattg 7671949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 43500037 - 43500001
Alignment:
Q  25 tgtgacattgtgattgaccaatatcaccaatgtcacc 61  Q
    ||||||||||||||||||||||||||| |||||||||    
T  43500037 tgtgacattgtgattgaccaatatcactaatgtcacc 43500001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10419519 - 10419556
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgat 38  Q
    |||||||||||||||||||||  |||||||||||||||    
T  10419519 tgtttctctctctttcacaagttttgtgacattgtgat 10419556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 25001391 - 25001420
Alignment:
Q  52 caatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||||||||||||||||||||||    
T  25001391 caatgtcacccaactctatgtcactcaaat 25001420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 35303299 - 35303250
Alignment:
Q  11 tctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcac 60  Q
    ||||||||||| ||||||||||| |||| ||| |||||||||||| ||||    
T  35303299 tctttcacaaggattgtgacattttgatcgactaatatcaccaatatcac 35303250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 6225600 - 6225529
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||| ||| |  ||||||||||||||||  ||| ||| |||||||| |||| ||||||||||    
T  6225600 tttctctctctttcataaggaccgtgacattgtgattgattaatgtcatcaatgtca-ccaattctatgtcac 6225529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42375071 - 42375145
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  42375071 tgtttctctctctttcacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 42375145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 47661903 - 47661983
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||||    
T  47661903 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaat 47661983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23444346 - 23444266
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| || |||||    
T  23444346 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaaat 23444266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6271763 - 6271837
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||    
T  6271763 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcac 6271837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 51265506 - 51265580
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||||| |||||    
T  51265506 tgtttctctctctttcacaagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcac 51265580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 53954671 - 53954745
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||| |||||||||||||||||||||||||| ||||  |||| ||||||||||||||||||||||||||||    
T  53954671 tgtttctcactctttcacaagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25818450 - 25818387
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  25818450 tgtttctctctctttcacaatcattgtgacattgtgattgaccaatgtcatcaatgtcacccaa 25818387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 23444345 - 23444411
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaata 82  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  23444345 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaata 23444411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35682227 - 35682301
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| |||||||||||||||||||||||||||| |  |||| |||||||||||||| |||||||||||||    
T  35682227 tgtttctctatctttcacaagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40789240 - 40789293
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40789240 tgtttctctctctttcacaagcattgtgacattgtgattggccaatatcaccaa 40789293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3862622 - 3862681
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  3862622 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3862681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3871379 - 3871438
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  3871379 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 3871438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 51265507 - 51265448
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  51265507 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 51265448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 47404661 - 47404611
Alignment:
Q  2 gtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47404661 gtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcacc 47404611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47762669 - 47762734
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaact 66  Q
    ||||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||| ||||||    
T  47762669 tgtttctctctctttcacaagcattgtgacattatggttgaccaatgtcaccaatatcatccaact 47762734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 6271764 - 6271705
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||    
T  6271764 cacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 6271705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 44379992 - 44380071
Alignment:
Q  2 gtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    |||||||||| ||| | ||| ||||| ||||||||||||  |||||||||||||||||| |||||||||||||| |||||    
T  44379992 gtttctctctattttataagtattgtaacattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaaat 44380071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50384182 - 50384131
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  50384182 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 50384131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 52028610 - 52028661
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  52028610 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 52028661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 55090069 - 55090023
Alignment:
Q  5 tctctctctttcacaagcattgtgacattgtgattgaccaatatcac 51  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  55090069 tctctctctttcacaagcattgtgacattgtgattgaccaatgtcac 55090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 26186087 - 26186042
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  26186087 tctctctttcacaagcattgtgacattgtgattgaccaatgtcacc 26186042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24006147 - 24006096
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  24006147 tgtttctctctctttcacaagcattgtgtcattgtgattggccaatgtcacc 24006096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 26186090 - 26186149
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||| |||||||||| ||||| ||| |||||| |||||||||||||||||    
T  26186090 cacaagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcac 26186149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 30861850 - 30861909
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| |||||||| ||| |||||||||||||||    
T  30861850 cacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcac 30861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 5048884 - 5048934
Alignment:
Q  24 ttgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  5048884 ttgtgacattatgattgaccaatgtcatcaatgtcacccaactctatgtca 5048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 30709986 - 30710035
Alignment:
Q  26 gtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  30709986 gtgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcac 30710035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38714884 - 38714957
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    ||||||| | |||||||||| ||||||||||||| |||||   |||||||||||||||||||| || |||||||    
T  38714884 tgtttctatttctttcacaaacattgtgacattgagattgggtaatatcaccaatgtcacccatctatatgtca 38714957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45591487 - 45591446
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgac 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  45591487 tgtttctctctctttcacaagcattgtgacattatgattgac 45591446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 47661904 - 47661856
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47661904 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31430538 - 31430499
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  31430538 tgtttctctctctttcataagcattgtgacattgtgattg 31430499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35682228 - 35682169
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||| ||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||    
T  35682228 cacaagtattatgacattgtgattggccaatgtcaccaatatcacctaactctatgtcac 35682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 19184549 - 19184488
Alignment:
Q  32 ttgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatccaaaat 93  Q
    ||||||||||||||| ||| |||||||||  |||||||| |||| ||||| |||||||||||    
T  19184549 ttgtgattgaccaatgtcatcaatgtcacttaactctatctcacccaaatgctatccaaaat 19184488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 54716384 - 54716351
Alignment:
Q  52 caatgtcacccaactctatgtcactcaaatacta 85  Q
    ||||||||||||||||||||||||||||||||||    
T  54716384 caatgtcacccaactctatgtcactcaaatacta 54716351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 44379990 - 44379934
Alignment:
Q  18 caagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||| | |||| ||||| || |||||||||| |||||||||||||    
T  44379990 caagcattgtgacattataattggccaatgtcgccaatgtcactcaactctatgtca 44379934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28694000 - 28693961
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  28694000 tgtttctctctctttcacaaacattgtgatattgtgattg 28693961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 55090072 - 55090107
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcac 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  55090072 cacaagcattgtgacattgtgattgaccaatgtcac 55090107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 49469983 - 49469911
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcact 76  Q
    ||||||||||||||||||  ||||||||| ||||||||| || | ||||| || ||| |||| |||||||||||    
T  49469983 tttctctctctttcacaataattgtgacactgtgattgatcattgtcacctatctca-ccaattctatgtcact 49469911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30861851 - 30861823
Alignment:
Q  1 tgtttctctctctttcacaagcattgtga 29  Q
    |||||||||||||||||||||||||||||    
T  30861851 tgtttctctctctttcacaagcattgtga 30861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 31846896 - 31846932
Alignment:
Q  25 tgtgacattgtgattgaccaatatcaccaatgtcacc 61  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  31846896 tgtgacattgtggttggccaatatcaccaatgtcacc 31846932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 41306672 - 41306636
Alignment:
Q  24 ttgtgacattgtgattgaccaatatcaccaatgtcac 60  Q
    |||||||||| || |||||||||||||||||||||||    
T  41306672 ttgtgacattatggttgaccaatatcaccaatgtcac 41306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 42375072 - 42375036
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  42375072 cacaagcattgtggcattgtgattgaccaatgtcacc 42375036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 47762664 - 47762600
Alignment:
Q  22 cattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactat 86  Q
    |||||| ||||||||||||  |||| |||| ||| |||| || ||||||||||| ||||||||||    
T  47762664 cattgtaacattgtgattggtcaatgtcacaaatatcactcagctctatgtcacccaaatactat 47762600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 14229430 - 14229356
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  14229430 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcac 14229356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6217301 - 6217227
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  6217301 tgtttctctctctttcacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 6217227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 33018620 - 33018684
Alignment:
Q  15 tcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33018620 tcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcattcaa 33018684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6722012 - 6722086
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  6722012 tgtttctctctctttcacaaacattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcac 6722086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16514485 - 16514559
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||||| |||||||||||||||||||    
T  16514485 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcac 16514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38933648 - 38933722
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  38933648 tgtttctctctctttcacaagcattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcac 38933722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14470669 - 14470582
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||||||||||||||||||||  ||||||||||||  |||| |||||||||||||||||||||||||||| ||| | ||||||    
T  14470669 tgtttctctctctttcacaagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagtgctatcc 14470582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24115981 - 24116055
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||| | ||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  24115981 tgtttcacactctttcacaagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcac 24116055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29508768 - 29508693
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacatt-gtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||| |||| |||||||  |||| ||||||||||||||||||||||||||||    
T  29508768 tgtttctctctctttcacaagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 29508693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 9173058 - 9173116
Alignment:
Q  17 acaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  9173058 acaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcac 9173116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 14892323 - 14892401
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||||||| ||| ||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| |||||    
T  14892323 tttctctctctttcataagtattgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaaat 14892401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37961767 - 37961841
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||| |||||||||||  |||| |||| ||| |||| ||||||||||||||    
T  37961767 tgtttctctctctttcacaagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcac 37961841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 32545855 - 32545936
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||  ||||||||||||| ||| | ||||||    
T  32545855 tctctctttcataagcattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtgctatcc 32545936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29925647 - 29925580
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactct 68  Q
    ||||||||||||||||||||||||| |||||||||||  | ||||| |||||||| ||||||||||||    
T  29925647 tgtttctctctctttcacaagcattctgacattgtgaggggccaatgtcaccaatatcacccaactct 29925580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15011341 - 15011391
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcac 51  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  15011341 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcac 15011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2828645 - 2828696
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| |||||    
T  2828645 tgtttctctctctttcagaagcattgtgacattgtgattggccaatgtcacc 2828696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 2894026 - 2894069
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  2894026 tttctctctctttcacaagcattgtgacactgtgattgaccaat 2894069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 16514486 - 16514427
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||| || ||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  16514486 cacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaactctatgtcac 16514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 29508767 - 29508826
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||| | ||||||||||| ||||| |||||||| |||||||||||||||||||    
T  29508767 cacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcac 29508826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8534207 - 8534256
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatca 50  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  8534207 tgtttctctctatttcacaagaattgtgacattgtaattgaccaatatca 8534256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 15011342 - 15011294
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    ||||| ||||||| ||||||||||| |||||||||||||||||||||||    
T  15011342 cacaaacattgtggcattgtgattggccaatatcaccaatgtcacccaa 15011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 1945461 - 1945398
Alignment:
Q  29 acattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatccaaaa 92  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||  ||| | ||||||||||    
T  1945461 acattgtaattgaccaatatcaccaatgtcacccaactttatatcatccaagtgctatccaaaa 1945398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 32545840 - 32545789
Alignment:
Q  24 ttgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| ||| ||||||||| |||||||||||||| |||||||||||||    
T  32545840 ttgtgacatcgtggttgaccaatgtcaccaatgtcacctaactctatgtcac 32545789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 14464622 - 14464582
Alignment:
Q  11 tctttcacaagcattgtgacattgtgattgaccaatatcac 51  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  14464622 tctttcacaagtattgtgacattgtgattgaccaatgtcac 14464582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37762078 - 37762039
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattg 40  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  37762078 tgtttctttctctttcacaagcattgcgacattgtgattg 37762039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 24115982 - 24115909
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcca 89  Q
    |||| ||||||| |||||||||||| ||||| | |||||||| || ||||||||| |||| ||| | |||||||    
T  24115982 cacaggcattgtaacattgtgattggccaatgttaccaatgtgactcaactctatctcacacaagtgctatcca 24115909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 6722013 - 6721965
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaa 64  Q
    |||||||||||||| ||||||||||  |||| |||||||||||| ||||    
T  6722013 cacaagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 37762077 - 37762121
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcac 60  Q
    |||||||||||||| ||||||||||||| || |||||||| ||||    
T  37762077 cacaagcattgtgatattgtgattgacccatgtcaccaatatcac 37762121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 19199 - 19113
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatc 87  Q
    ||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||    
T  19199 tgtttctctttcttccacaagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaaatgctatc 19113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5033222 - 5033296
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  5033222 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33841668 - 33841594
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||||    
T  33841668 tgtttctctctctttcacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35441046 - 35440972
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| |||||    
T  35441046 tgtttctctctctttcacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcac 35440972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10086818 - 10086891
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    |||||||||||||||||||| |||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  10086818 tgtttctctctctttcacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 43844545 - 43844617
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| | ||||||    
T  43844545 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaattgctatcc 43844617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6296666 - 6296753
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatcc 88  Q
    ||||||||||||||||||||| ||||||||||| | |||||| ||| |||| ||||||| |||||||||| |||| ||||||||||||    
T  6296666 tgtttctctctctttcacaagtattgtgacattataattgactaatgtcactaatgtcatccaactctatatcacccaaatactatcc 6296753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 5667158 - 5667100
Alignment:
Q  17 acaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  5667158 acaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcac 5667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 5667160 - 5667232
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  5667160 tttctctctctttcacaagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcac 5667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 8243464 - 8243523
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  8243464 cacaagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcac 8243523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 8796484 - 8796425
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  8796484 cacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcac 8796425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 35441045 - 35441104
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  35441045 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcac 35441104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 45191204 - 45191130
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||| |||||||||| |||||||||| | |||| |||||||| ||| |||||||||||||||    
T  45191204 tgtttctctctctttcataagcattgtggcattgtgattaatcaatgtcaccaatatcatccaactctatgtcac 45191130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 5033223 - 5033164
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||    
T  5033223 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 5033164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34229702 - 34229753
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  34229702 tgtttctctctctttcacaagcattgtgatattgtgattgaccaatgtcacc 34229753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8796483 - 8796557
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| ||||||||||||||||||||||| ||||||  |||| |||||||| ||||| | |||||||||||    
T  8796483 tgtttctctatctttcacaagcattgtgacattttgattggtcaatgtcaccaatatcacctagctctatgtcac 8796557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 34229703 - 34229629
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatccaa 90  Q
    |||||||||| ||||||||||||||||  || |||| ||||||||||||||||||||||| ||| | ||||||||    
T  34229703 cacaagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatgtcacacaagtgctatccaa 34229629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39851016 - 39851089
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    ||||||||||||||||||||||||| | | ||||||||||  |||| ||||||||||||| ||||| |||||||    
T  39851016 tgtttctctctctttcacaagcattataatattgtgattggtcaatgtcaccaatgtcactcaactttatgtca 39851089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31159912 - 31159972
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacc 61  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||| |||||||| |||||    
T  31159912 tgtttctctctctttcacaagcattgtgacattatgattggcgaatgtcaccaatatcacc 31159972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 2581887 - 2581828
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||| ||||| ||| ||||||||||||| ||||||||||    
T  2581887 cacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcac 2581828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 10086819 - 10086760
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||| |||| |||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  10086819 cacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaattctatgtcac 10086760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 22649907 - 22649848
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| ||||||||||  ||||| ||||||||||||| ||||||||||||||    
T  22649907 cacaagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcac 22649848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33841667 - 33841726
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||| |||| ||||||  |||| ||||||||||||||||||||||||||||    
T  33841667 cacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcac 33841726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 43844542 - 43844475
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 74  Q
    ||||||| ||||||||||  ||||||| ||||| |||||||||| |||| ||||||||||||||||||    
T  43844542 tctctctctcacaagcatcctgacattatgattaaccaatatcatcaatatcacccaactctatgtca 43844475  T

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Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8243465 - 8243415
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcac 51  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  8243465 tgtttctctctctttcacaagcattgtggcattgtgattgatcaatgtcac 8243415  T

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Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 35031689 - 35031639
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcacca 53  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  35031689 tttctctctctttcacaagcattgcgacattgtgattgatcaatgtcacca 35031639  T

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Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34541880 - 34541829
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||| |||||    
T  34541880 tgtttctctctctttcacaagcattgtgatattatgattggccaatgtcacc 34541829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4958660 - 4958733
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||| |||||||| |||||||||  |||| |||| ||| ||| | |||||||||||||    
T  4958660 tgtttctctctctttcacaagtattgtgac-ttgtgattggtcaatgtcactaatatcatctaactctatgtcac 4958733  T

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Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 37618802 - 37618750
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaat 55  Q
    ||||||||||| | ||||| |||||||||||||||||| ||||| ||||||||    
T  37618802 tttctctctctcttacaaggattgtgacattgtgattggccaatgtcaccaat 37618750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 1880306 - 1880353
Alignment:
Q  8 ctctctttcacaagcattgtgacattgtgattgaccaatatcaccaat 55  Q
    |||||||||| ||| | |||||||||||||||||||||| ||||||||    
T  1880306 ctctctttcataaggactgtgacattgtgattgaccaatgtcaccaat 1880353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 13470042 - 13470093
Alignment:
Q  3 tttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||||||||||| | ||| ||||| |||||||||||||||||| |||||||    
T  13470042 tttctctctcttttataagtattgtaacattgtgattgaccaatgtcaccaa 13470093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 39139838 - 39139875
Alignment:
Q  17 acaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  39139838 acaaggattgtgacattgtgattgaccaatgtcaccaa 39139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 35031706 - 35031750
Alignment:
Q  31 attgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||| |||||||||||||| ||| |||| ||||||||||||||    
T  35031706 attgtggttgaccaatatcacaaatatcactcaactctatgtcac 35031750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24618678 - 24618600
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaa 79  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  24618678 tgtttctctctctttcataagcattatgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactcaa 24618600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12343161 - 12343232
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 72  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  12343161 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13043518 - 13043598
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaat 81  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||| |||||||| |||| |||||||||||||| |||||    
T  13043518 tgtttctctctctttcacaagcattgtgatattgtgattagccaatgtcaccaatatcactcaactctatgtcacccaaat 13043598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 24587523 - 24587464
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24587523 cacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcac 24587464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 17750969 - 17751037
Alignment:
Q  7 tctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||||||||||||||||||||| | ||||| ||| |||| |||||||||||||||||||    
T  17750969 tctctctttcacaagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcac 17751037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 24975815 - 24975755
Alignment:
Q  15 tcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||    
T  24975815 tcacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcac 24975755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10521926 - 10521873
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaa 54  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  10521926 tgtttctctctctttcataagcattgtgacattgtgattggccaatgtcaccaa 10521873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 17750963 - 17750891
Alignment:
Q  17 acaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaatactatccaa 90  Q
    |||| ||||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||| | ||||||||    
T  17750963 acaaacattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaagtgctatccaa 17750891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 551242 - 551191
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||    
T  551242 tgtttctctctctttcacaaacattgtggcattgtgattgaccaatgtcacc 551191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 551241 - 551307
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcactcaaata 82  Q
    ||||||||||||| ||||||||||| ||||| |||||||| ||| |||| |||||||||| ||||||    
T  551241 cacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaaata 551307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2315381 - 2315330
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||| ||||||||||||| |||||||||||||||||||| |||| |||||    
T  2315381 tgtttcgctctctttcacaaacattgtgacattgtgattgatcaatgtcacc 2315330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 13043484 - 13043444
Alignment:
Q  42 ccaatatcaccaatgtcacccaactctatgtcactcaaata 82  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  13043484 ccaatatcaccaatgtcacccaattctatgtcacccaaata 13043444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 7384552 - 7384491
Alignment:
Q  14 ttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||| |||| ||||||||||||||  |||| |||| ||||||| |||||||||| ||||    
T  7384552 ttcacaaacattatgacattgtgattggtcaatgtcactaatgtcatccaactctatatcac 7384491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 13043519 - 13043474
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacc 61  Q
    ||||||||||||||||||  |||||||||||||| ||||| |||||    
T  13043519 cacaagcattgtgacatttcgattgaccaatatcgccaatatcacc 13043474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24587522 - 24587558
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtga 37  Q
    |||||||| || |||||||||||||||||||||||||    
T  24587522 tgtttctcgctttttcacaagcattgtgacattgtga 24587558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 31654367 - 31654331
Alignment:
Q  16 cacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  31654367 cacaagcattgtgacattgtgattggccaatgtcacc 31654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27297 - 27223
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  27297 tgtttctctctctttcacaagaattatgacattgtgattggccaatatcactaatgtcacccaactctatgtcac 27223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 27299 - 27355
Alignment:
Q  19 aagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  27299 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcac 27355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49780 - 49706
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 75  Q
    ||||||||| ||||||||||||||||||||||||||||||  |||| ||| ||||||||||||||||||||||||    
T  49780 tgtttctctttctttcacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcac 49706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 63818 - 63869
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  63818 tgtttctctctctttcacaagcattgtgacattgtgattggccaatgtcacc 63869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2274 - 2319
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2274 tgtttctctctctttcacaagcattgtgacattgtgattgatcaat 2319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2274 - 2319
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaat 46  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2274 tgtttctctctctttcacaagcattgtgacattgtgattgatcaat 2319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2964 - 2913
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcacc 52  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  2964 tgtttctctctctttcacaaacattgtgacattgtgattggtcaatatcacc 2913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4969 - 4909
Alignment:
Q  1 tgtttctctctctttcacaagcattgtgacattgtgattgaccaatatcaccaatgtcacc 61  Q
    ||||| ||||||||||||||||||||| | ||||||||||  | || ||||||||||||||    
T  4969 tgtttgtctctctttcacaagcattgtaatattgtgattggtcgatgtcaccaatgtcacc 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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