View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6577_low_35 (Length: 201)
Name: NF6577_low_35
Description: NF6577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6577_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 40820656 - 40820822
Alignment:
| Q |
18 |
aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagctacatattggcgagc |
115 |
Q |
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| T |
40820656 |
aaaggtgtcctcctaacacaccgacccgtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagc |
40820755 |
T |
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| Q |
116 |
tcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
182 |
Q |
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| T |
40820756 |
tcaataaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
40820822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 20293185 - 20293009
Alignment:
| Q |
18 |
aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagctacatattggcgagc |
115 |
Q |
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| T |
20293185 |
aaaggtgtcctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagc |
20293086 |
T |
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| Q |
116 |
tcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgttcatctcact |
192 |
Q |
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| T |
20293085 |
tcaatgaactacagcttgcaaaggccccacatataccataaacatcacactctgattctcgggttgtccatgtcact |
20293009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 20169560 - 20169726
Alignment:
| Q |
18 |
aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagctacatattggcgagc |
115 |
Q |
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| T |
20169560 |
aaaggtgtccttcgaacacacccaccggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagc |
20169659 |
T |
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| Q |
116 |
tcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
182 |
Q |
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| T |
20169660 |
tcaatgaattacaacttgcaaatgccccacataagtcgtaaacatcacactttgattcccgacttgt |
20169726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 20272298 - 20272212
Alignment:
| Q |
96 |
acagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggcttgt |
182 |
Q |
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| T |
20272298 |
acagctgcatattggtgaggtcgatgaactacagattgcaaatgcgccacatataccataaacatcacactctgaatctcggcttgt |
20272212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 20278109 - 20277972
Alignment:
| Q |
31 |
taacacaccgacccgtccaattatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagctacatattggcgagctcattaaactaca |
128 |
Q |
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||||||||| ||| ||||| |||||| | ||||||||| | |||||| ||| ||||||||| | |||| |||||||||| ||| || | ||||||| |
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| T |
20278109 |
taacacacccaccggtccagttatgtccattccattcttgtatgtttctaggttcaaatcctctcagacagatacatattggtgagaacaatgaactaca |
20278010 |
T |
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| Q |
129 |
gcttgcaaatgctgcacatataccataaacatcacact |
166 |
Q |
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| T |
20278009 |
gcttgcaaatgccccacatataccgtaaacatcacact |
20277972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 20282702 - 20282536
Alignment:
| Q |
18 |
aaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttct--gtttctgggtacaaatcctcgaaaacagc--tacatattggcga |
113 |
Q |
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||||| || ||| ||||||||| ||| ||||| ||||||||| ||||||||| | |||||| ||| ||||||||| | |||| |||||||||| || |
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| T |
20282702 |
aaaggggttctcctaacacacccaccggtccagttatgtatattccattcttgtatgtttctaggttcaaatcctctcagacagagatacatattggtga |
20282603 |
T |
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| Q |
114 |
gctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggctt |
180 |
Q |
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| || | || |||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||| |
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| T |
20282602 |
gaccaatgaattacagcttgcaaatgccccacatataccataagcatcacactctgagtcttggctt |
20282536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 20064097 - 20064182
Alignment:
| Q |
94 |
aaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacactatgattctcggct |
179 |
Q |
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| T |
20064097 |
aaacagctgcatattggtgtgttcaatgaactacagcttgcaaatgccccacatgtaccatatacatcacactctgattttcggct |
20064182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 20230148 - 20230076
Alignment:
| Q |
94 |
aaacagctacatattggcgagctcattaaactacagcttgcaaatgctgcacatataccataaacatcacact |
166 |
Q |
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| T |
20230148 |
aaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccccacatagaccataaacatcacact |
20230076 |
T |
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