View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6578_low_2 (Length: 405)
Name: NF6578_low_2
Description: NF6578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6578_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 41808684 - 41809088
Alignment:
| Q |
1 |
atttattttctgtatgttatattcaattagaagtagaactaggattcatcaccactgcctagtatatatttgaatataccgggttattttttctttgaag |
100 |
Q |
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| T |
41808684 |
atttattttgtgtttgttatattcaattagaagtagaactaggattcatcaccactgcctagtatatatttgaatatactgggttattttttctttgaag |
41808783 |
T |
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| Q |
101 |
cccttttgatgaatctgtaatatgctccttaatttcaatatgttgaagtctttgtgtatgtgttggaaacttggaatatgctatgcatatactttccatt |
200 |
Q |
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| T |
41808784 |
cccttttgatgaatctgtactatgctccttaatttcaatatgttgaagtctttgtgtatgtgttggaaacttggaatatgctatgcatatactttccatt |
41808883 |
T |
|
| Q |
201 |
attattttgctgacacgctagtttggactgctttgcatttgaatcaggtcacagattcttgctttctaaatttatcttcatggccagcgatgatacaaat |
300 |
Q |
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| T |
41808884 |
attattttgctgacacgctagtttggactgctttgcatttgaatcaggtcacagattcttgctttctaaatttatcttcatggccagcgatgatacaaat |
41808983 |
T |
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| Q |
301 |
gagcccttactattgagatcacaggacactgtggctcaaaaggctaaaggacgattaaaccaaagaaggctcctccgttctagaagtgctcctcacacag |
400 |
Q |
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| T |
41808984 |
gagcccttactattgagatcacaggacactgtggctcaaaaggctaaaggacgattaaaccaaagaaggctcctccgttctagaagtgctcctcacacag |
41809083 |
T |
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| Q |
401 |
atcat |
405 |
Q |
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| T |
41809084 |
atcat |
41809088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 41362804 - 41362773
Alignment:
| Q |
18 |
tatattcaattagaagtagaactaggattcat |
49 |
Q |
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| T |
41362804 |
tatattcaattagaagtagaactaggattcat |
41362773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 38571832 - 38571801
Alignment:
| Q |
18 |
tatattcaattagaagtagaactaggattcat |
49 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38571832 |
tatattcaattagaagtagaactaggattcat |
38571801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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