View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6578_low_3 (Length: 398)
Name: NF6578_low_3
Description: NF6578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6578_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 50706599 - 50706229
Alignment:
| Q |
18 |
accacttctccgctgcctcactctaatccaattccgttaccgacttatgaagtgagaagcaaaagaaaattgttaaaattaaagcactgtgcatcgaatg |
117 |
Q |
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| T |
50706599 |
accacttctcggctgcctcactctaatccaattccgttaccgacttatgaagtgagaagcaaaagaaaattgttaaaattaaagcactgtgcatcgaatg |
50706500 |
T |
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| Q |
118 |
tatacagtgttcatctttgtttttaaagttgatggtgtttgtattttcaaaaatcaattgctgcattattcaactgggccaaaaggaaaaaacctgcaat |
217 |
Q |
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| T |
50706499 |
tatacagtgttcatctttgtttttaaagttgatggtgtttgtattttcaaaaatcaattgctgcattattcaactggaccaaaaggaaaaaacctgcaat |
50706400 |
T |
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| Q |
218 |
tatttctcaaatttggannnnnnnct-ttcccaaaacgtgtttgtaatctatgttgaattactttttcttttctctactattgttaaagatggactagat |
316 |
Q |
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| T |
50706399 |
tatttctcaaatttggatttttttttcttcccaaaacgtgttggtaatctatgctgaattactttttcttttctctactattgttaaagatggactagat |
50706300 |
T |
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| Q |
317 |
taaatcacatatttattattgtccctttccatcacatcttttcttatgttgaaattaaatcacatacctttg |
388 |
Q |
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| T |
50706299 |
taaatcacatatttattattgtcccttt-catcacatcttttcttatgttgaaattaaatcacatacctttg |
50706229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 8749453 - 8749532
Alignment:
| Q |
301 |
taaagatggactagattaaatcac--atatttattattgtccctttccatcacatcttttcttatgttgaaattaaatca |
378 |
Q |
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| T |
8749453 |
taaagatggacaagatgaaatcatgtatattttttattgcccctttccatcaaaacttttcttaaactgaaattaaatca |
8749532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 24963769 - 24963690
Alignment:
| Q |
301 |
taaagatggactagattaaatcac--atatttattattgtccctttccatcacatcttttcttatgttgaaattaaatca |
378 |
Q |
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| T |
24963769 |
taaagatggacaagatgaaatcatgtatattttttattgcccctttccatcaaaacttttcttaaactgaaattaaatca |
24963690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 378
Target Start/End: Complemental strand, 38113199 - 38113120
Alignment:
| Q |
301 |
taaagatggactagattaaatcac--atatttattattgtccctttccatcacatcttttcttatgttgaaattaaatca |
378 |
Q |
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| T |
38113199 |
taaagatggacaagatgaaatcatgtatattttttattgcccctttccatcaaaacttttcttaaactgaaattaaatca |
38113120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 40403529 - 40403608
Alignment:
| Q |
301 |
taaagatggactagattaaatcac--atatttattattgtccctttccatcacatcttttcttatgttgaaattaaatca |
378 |
Q |
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||||||||||| |||| |||||| |||||| |||||| |||||||||||| | ||||||||| ||||||||||||| |
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| T |
40403529 |
taaagatggacaagatgaaatcatgtatattttttattgcccctttccatcaaaacttttcttaaactgaaattaaatca |
40403608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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