View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6578_low_4 (Length: 358)
Name: NF6578_low_4
Description: NF6578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6578_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 41808612 - 41808264
Alignment:
| Q |
1 |
gtaactgcatctatttctttaagctataaagcagaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattgaagcaccgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41808612 |
gtaactgcatctatttctttaagctataaagcagaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattgaagcaccgtc |
41808513 |
T |
|
| Q |
101 |
aagttctagataccataaaagatcaaaaccatatagatcatacatcaagcagattaattaacaaggacttcctatttgcatatcaccgcttgatttcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41808512 |
aagttctagataccataaaagatcaaaaccatatagatcatacatcaaacagattaattaacaaggacttcctatctgcatatcaccgcttgatttcctt |
41808413 |
T |
|
| Q |
201 |
gcctcaactccatagtacttctatttctaatgaaaattacatcaatatagctttgaacaaaaaatatagctttaaagtagaatccattttatttgccctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41808412 |
gcctcaactccatagtacttctatttctaatgaaaattacatcaatatagctttgaacaaaaaatatagctttaaagtagaatccattttatttgccctt |
41808313 |
T |
|
| Q |
301 |
tcagttcaattccttcattcatttcaattgatgctaattagtaataagt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41808312 |
tcagttcaattccttcattcatttcaattgatgctaattagtaataagt |
41808264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 41362925 - 41363021
Alignment:
| Q |
33 |
agaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattgaagcaccgtcaagttctagataccataaaagatcaaaac |
129 |
Q |
| |
|
|||||| ||| |||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
41362925 |
agaacaatgactttgtatgtacaataactgataagcattagaagtagcataaccattgaaacaccgtcaagttttagataccacaaaagatcaaaac |
41363021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 745504 - 745382
Alignment:
| Q |
1 |
gtaactgcatctatttctttaagctataaagcagaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattgaagcaccgtc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
745504 |
gtaactgcatctatttctttcagctataaagcagaacagtgactttgtaagtacaataagcaataagcattaaaagtagcataaccattgaagcaccgtc |
745405 |
T |
|
| Q |
101 |
aagttctagataccataaaagat |
123 |
Q |
| |
|
|| ||||||||||| ||||||| |
|
|
| T |
745404 |
aaactctagataccacaaaagat |
745382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 38572123 - 38572239
Alignment:
| Q |
13 |
atttctttaagctataaagcagaacagtgattttgtaagtacaataactaataagcattaaaagtagcataaccattgaagcaccgtcaagttctagata |
112 |
Q |
| |
|
||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38572123 |
atttcgttaagttataaagcaaaacagtgactttgtaagtacaataactaataagcattaaaagtaggataaccattgaagcaccgtcaagctctagata |
38572222 |
T |
|
| Q |
113 |
ccataaaagatcaaaac |
129 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
38572223 |
ccacaaaagatcaaaac |
38572239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University