View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6578_low_5 (Length: 285)
Name: NF6578_low_5
Description: NF6578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6578_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 47262305 - 47262574
Alignment:
| Q |
1 |
cacagccaaaaataccccttcataaaaactcgagtttccattagcataatccaccgtagtattcaccacactccataacgttccatcaacgatctgatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47262305 |
cacagccaaaaataccccttcataaaaactcgagtttccattagcataatccaccgtagtattcaccacactccataacgttccatcaatgatctgatca |
47262404 |
T |
|
| Q |
101 |
aacaccggcggcgtaagatgatcaacaccgttggctccaccgtagaaataagtagtacgtatcatatattttgcaccgcgatacacaggaatattgtagc |
200 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262405 |
aacaccggcggcgtaggatgatcaacaccgttgactccaccgtagaaataagtagtacgtatcatatattttgcaccgcgatacacaggaatattgtagc |
47262504 |
T |
|
| Q |
201 |
agtgttttttaacttggagagggaatgaacgaagggttttgagagttgggagaaggacttgggtggttat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262505 |
agtgttttttaacttggagagggaatgaacgaagggttttgagagttgggagaaggacttgggtggttat |
47262574 |
T |
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