View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6578_low_7 (Length: 246)
Name: NF6578_low_7
Description: NF6578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6578_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34666960 - 34667187
Alignment:
| Q |
1 |
tgttggaaatcggaagctatagggaatgaaatagtactctagaagtgaatgtttgtttttctgtccctaaacaaagacctatacacagtgtacttataag |
100 |
Q |
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| T |
34666960 |
tgttggaaataggaagctatagggaatgaaatagtactctagaagtgaatgtttgtttttctgtccctaatcaaagacctatacacagtgtacttataag |
34667059 |
T |
|
| Q |
101 |
tattaaataaatgaatcactaatgtgcatttagatttgattggaagtgaaaactagacaagacaaacctgacaacatttttgtccagtg-nnnnnnnncc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34667060 |
tattaaataaatgaatcactaatgtgcatttagatttgattggaagtgaaaactagacaagacaaacctgacaacatttttgtccagtgtttttctttcc |
34667159 |
T |
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| Q |
200 |
ctttttattcctttgacacctactttgt |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
34667160 |
ctttttattcctttgacacctactttgt |
34667187 |
T |
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