View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_high_15 (Length: 382)
Name: NF6579_high_15
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 35637935 - 35638288
Alignment:
| Q |
19 |
agggagcaacattttttagtcaaaagcaagctagcaacaatttgtttactgactaaacgaagtacaatttattagtcaagcaaatgaacaacatgagtga |
118 |
Q |
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| T |
35637935 |
agggagcaacattttttagtcaaaagcaagctagcaacaatttgtttactgactaaacgaagtacaatttattagtcaagcaaatgaacaacatgagtga |
35638034 |
T |
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| Q |
119 |
tatttaaccaagtaccaaccaatttctatatataataacattgacccaaatctatattaatgttgaacttacgagtgtgaatccagttcgaattttctcc |
218 |
Q |
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| T |
35638035 |
tattttaccaagtaccaaccaatttctatatataataacattgacccaaatctatattaatgttgaacttacgagtgtgaatccagttcgaattttctcc |
35638134 |
T |
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| Q |
219 |
tttccctagtatatgtatccattattatctaacctttatcaaattatcaagtcaaatggacaggaattctaatttaatttcccaatatacatttctcaat |
318 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35638135 |
tttccctagtatatgtatccgttattatctaacctttatcaaattatcaag-caaatggacaggaattctaatttaatttcccaatatacatttctcaat |
35638233 |
T |
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| Q |
319 |
cgcttccaaaagttgaatatcttggattctgaagaaactatcgctctattcattt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35638234 |
cgcttccaaaagttgaatatcttggattctgaagaaactatcgctctattcattt |
35638288 |
T |
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