View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6579_high_16 (Length: 380)

Name: NF6579_high_16
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6579_high_16
NF6579_high_16
[»] chr6 (1 HSPs)
chr6 (8-368)||(34791414-34791772)
[»] scaffold0200 (1 HSPs)
scaffold0200 (97-143)||(26607-26653)
[»] chr7 (7 HSPs)
chr7 (99-143)||(18044257-18044301)
chr7 (99-155)||(32849729-32849785)
chr7 (99-137)||(11998005-11998043)
chr7 (99-137)||(17196957-17196995)
chr7 (107-137)||(27009516-27009546)
chr7 (99-137)||(27312308-27312346)
chr7 (105-137)||(31197746-31197778)
[»] chr5 (4 HSPs)
chr5 (97-137)||(5049288-5049328)
chr5 (96-143)||(15971093-15971140)
chr5 (99-137)||(11464915-11464953)
chr5 (99-143)||(22392834-22392878)
[»] chr2 (8 HSPs)
chr2 (99-143)||(1845056-1845100)
chr2 (105-137)||(13266641-13266673)
chr2 (107-137)||(6714310-6714340)
chr2 (99-137)||(15038111-15038149)
chr2 (99-137)||(18976462-18976500)
chr2 (99-152)||(1191650-1191703)
chr2 (96-137)||(4769318-4769359)
chr2 (97-137)||(34516419-34516459)
[»] chr8 (4 HSPs)
chr8 (99-137)||(34610694-34610732)
chr8 (99-137)||(42328160-42328198)
chr8 (100-137)||(28964188-28964225)
chr8 (105-137)||(15259419-15259451)
[»] chr4 (4 HSPs)
chr4 (99-137)||(35229320-35229358)
chr4 (99-137)||(45787711-45787749)
chr4 (99-137)||(52494640-52494678)
chr4 (105-137)||(20566502-20566534)
[»] chr3 (5 HSPs)
chr3 (99-137)||(15566507-15566545)
chr3 (99-137)||(32151576-32151614)
chr3 (99-137)||(40133456-40133494)
chr3 (101-137)||(17579144-17579180)
chr3 (105-137)||(33698719-33698751)
[»] chr1 (7 HSPs)
chr1 (99-137)||(15059409-15059447)
chr1 (99-137)||(23041674-23041712)
chr1 (99-137)||(36155895-36155933)
chr1 (99-136)||(26513155-26513192)
chr1 (97-137)||(23734269-23734309)
chr1 (97-137)||(23741461-23741501)
chr1 (221-265)||(36155902-36155946)
[»] scaffold0217 (1 HSPs)
scaffold0217 (97-137)||(7314-7354)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 34791414 - 34791772
Alignment:
Q  8 atatttctttttgaggggtttatagtatctatcgatcttgtaattttttgatttttatctgattaatctaatcnnnnnnnnnnnnaagtttggtattcga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||| |    
T  34791414 atatttctttttgaggggtttatagtatctatcgatcttgtaattttttgatttttatctgattaatctaatctttttttttt--aagtttggtattcaa 34791511  T
Q  108 tccaagaatcgactaatttgaggggaccaaatccactggtcacttatgagatcctatttaaagttataacatagtttgagcttgcccaccgaaattgcta 207  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34791512 tccaagaatcgactaatttgaggggaccaaatccactagtcacttatgagatcctatttaaagttataacatagtttgagcttgcccaccgaaattgcta 34791611  T
Q  208 ccggcgggaatctgatccaaaaatggactaatttgaagggaccaaacccactgcccactaatttgaggggactaaaaccttaaaaagatcaaactctaag 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34791612 tcggcgggaatctgatccaaaaatggactaatttgaagggaccaaacccactgcccactaatttgaggggactaaaaccttaaaaagatcaaactctaag 34791711  T
Q  308 atcccaaaccaactactaatcccatttttaatctaatctgcttactattgccttagtggat 368  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34791712 atcccaaaccaactactaaccccatttttaatctaatctgcttactattgccttagtggat 34791772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 26607 - 26653
Alignment:
Q  97 ttggtattcgatccaagaatcgactaatttgaggggaccaaatccac 143  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||    
T  26607 ttggtattcgatccaaaaatcgactaattcgaggggaccaattccac 26653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 18044301 - 18044257
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaaatccac 143  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||    
T  18044301 ggtatccgatccaagaatcgactaatctgaggggaccaattccac 18044257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 32849785 - 32849729
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaaatccactggtcacttatg 155  Q
    ||||| |||||||||||||||||||| ||||||||||||  ||||||  ||||||||    
T  32849785 ggtatccgatccaagaatcgactaatctgaggggaccaatcccactgcccacttatg 32849729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 11998043 - 11998005
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  11998043 ggtatccgatccaagaatcgactaattcgaggggaccaa 11998005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 17196957 - 17196995
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  17196957 ggtatccgatccaagaatcgactaattcgaggggaccaa 17196995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Complemental strand, 27009546 - 27009516
Alignment:
Q  107 atccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||||||||||||||||||||||||    
T  27009546 atccaagaatcgactaatttgaggggaccaa 27009516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 27312346 - 27312308
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  27312346 ggtatccgatccaagaatcgactaatctgaggggaccaa 27312308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 31197778 - 31197746
Alignment:
Q  105 cgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||||||||||||| ||||||||||||    
T  31197778 cgatccaagaatcgactaatctgaggggaccaa 31197746  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 5049328 - 5049288
Alignment:
Q  97 ttggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  5049328 ttggtattcgatccaagaatcgactaattcgatgggaccaa 5049288  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 15971093 - 15971140
Alignment:
Q  96 tttggtattcgatccaagaatcgactaatttgaggggaccaaatccac 143  Q
    ||||||||||||| |||||||||||||||| ||||||| ||| |||||    
T  15971093 tttggtattcgattcaagaatcgactaattcgaggggatcaattccac 15971140  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 11464915 - 11464953
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  11464915 ggtatccgatccaagaatcgactaattcgaggggaccaa 11464953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 22392878 - 22392834
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaaatccac 143  Q
    ||||| |||||||| ||||||||||| |||||||||||| |||||    
T  22392878 ggtatccgatccaaaaatcgactaatctgaggggaccaattccac 22392834  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 1845056 - 1845100
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaaatccac 143  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||    
T  1845056 ggtatccgagccaagaatcgactaatttgaggggaccaattccac 1845100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 13266673 - 13266641
Alignment:
Q  105 cgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||||||||||||||||||||||||||    
T  13266673 cgatccaagaatcgactaatttgaggggaccaa 13266641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 137
Target Start/End: Original strand, 6714310 - 6714340
Alignment:
Q  107 atccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||||||||||||||||||||||||    
T  6714310 atccaagaatcgactaatttgaggggaccaa 6714340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 15038149 - 15038111
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  15038149 ggtatccgatccaagaatcgactaatctgaggggaccaa 15038111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 18976462 - 18976500
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  18976462 ggtatccgatccaagaatcgactaattcgaggggaccaa 18976500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 1191703 - 1191650
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaaatccactggtcactt 152  Q
    |||||||| |||||||||||||||||| ||||||| ||| ||||| | ||||||    
T  1191703 ggtattcggtccaagaatcgactaattcgaggggaacaattccaccgttcactt 1191650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 4769359 - 4769318
Alignment:
Q  96 tttggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||| ||| ||||| |||||||||||||||||||||||||||    
T  4769359 tttgatatccgatctaagaatcgactaatttgaggggaccaa 4769318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 34516419 - 34516459
Alignment:
Q  97 ttggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||||| ||||||||||||||||||||  |||||||||||    
T  34516419 ttggtatccgatccaagaatcgactaatccgaggggaccaa 34516459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 34610694 - 34610732
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  34610694 ggtatccgatccaagaatcgactaattcgaggggaccaa 34610732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 42328198 - 42328160
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  42328198 ggtatccgatccaagaatcgactaattcgaggggaccaa 42328160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 28964225 - 28964188
Alignment:
Q  100 gtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28964225 gtattcgatctaagaatcgactaattcgaggggaccaa 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 15259419 - 15259451
Alignment:
Q  105 cgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||||||||||||||||||| |||||||||||    
T  15259419 cgatccaagaatcgactaattcgaggggaccaa 15259451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 35229358 - 35229320
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  35229358 ggtatccgatccaagaatcgactaattcgaggggaccaa 35229320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 45787711 - 45787749
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  45787711 ggtatccgatccaagaatcgactaattcgaggggaccaa 45787749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 52494678 - 52494640
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  52494678 ggtatccgatccaagaatcgactaattcgaggggaccaa 52494640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 20566534 - 20566502
Alignment:
Q  105 cgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||||||||||||| ||||||||||||    
T  20566534 cgatccaagaatcgactaatctgaggggaccaa 20566502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 15566507 - 15566545
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  15566507 ggtatccgatccaagaatcgactaatctgaggggaccaa 15566545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 32151614 - 32151576
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  32151614 ggtatccgatccaagaatcgactaattcgaggggaccaa 32151576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 40133456 - 40133494
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  40133456 ggtatccgatccaagaatcgactaattcgaggggaccaa 40133494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 17579144 - 17579180
Alignment:
Q  101 tattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  17579144 tattcgatccaaaaatcgactaatctgaggggaccaa 17579180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 33698719 - 33698751
Alignment:
Q  105 cgatccaagaatcgactaatttgaggggaccaa 137  Q
    |||||| ||||||||||||||||||||||||||    
T  33698719 cgatccgagaatcgactaatttgaggggaccaa 33698751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 15059409 - 15059447
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  15059409 ggtatccgatccaagaatcgactaattcgaggggaccaa 15059447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 23041712 - 23041674
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  23041712 ggtatccgatccaagaatcgactaattcgaggggaccaa 23041674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 36155895 - 36155933
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  36155895 ggtatccgatccaagaatcgactaatttgaagggaccaa 36155933  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 26513155 - 26513192
Alignment:
Q  99 ggtattcgatccaagaatcgactaatttgaggggacca 136  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  26513155 ggtattcgatccaagaatcgactaatccgaggggacca 26513192  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 23734309 - 23734269
Alignment:
Q  97 ttggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||||| |||| ||||||||||||||| ||||||||||||    
T  23734309 ttggtatccgattcaagaatcgactaatctgaggggaccaa 23734269  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 23741501 - 23741461
Alignment:
Q  97 ttggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||||| |||| ||||||||||||||| ||||||||||||    
T  23741501 ttggtatccgattcaagaatcgactaatctgaggggaccaa 23741461  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 36155902 - 36155946
Alignment:
Q  221 gatccaaaaatggactaatttgaagggaccaaacccactgcccac 265  Q
    ||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  36155902 gatccaagaatcgactaatttgaagggaccaatcccaccgcccac 36155946  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 7314 - 7354
Alignment:
Q  97 ttggtattcgatccaagaatcgactaatttgaggggaccaa 137  Q
    ||||||| ||||||||||||||||||||  |||||||||||    
T  7314 ttggtatccgatccaagaatcgactaatccgaggggaccaa 7354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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