View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_high_17 (Length: 377)
Name: NF6579_high_17
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 34791363 - 34791019
Alignment:
| Q |
15 |
aatactaaagcattaagtacgttaatgtttagaattcaaagaatctaaacgtgtaacacagtaaagttgtagttattgacatatgtacacactcaataat |
114 |
Q |
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| T |
34791363 |
aatactaaagcattaagtacgttaatgtttagaattcaaagaatctaaacgtgtaacacagtaaagttgtagttattgacatatgtacacactcaataat |
34791264 |
T |
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| Q |
115 |
tgactttggtaccgaccctacacatttcattaatgtcgaaaaacacaactacatcaagttacaaccatgactttcatcaattcacaattttaggaatgca |
214 |
Q |
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| T |
34791263 |
tgactttggtaccgaccttacacatttcattaatgacgaaaaacacaactacatcaagttacaaccatgactttcatcaattcacaattttaggaatgca |
34791164 |
T |
|
| Q |
215 |
gatttttctcaaatgttggtctctgttgcatactttttcttgaataagaaactacattattcctctgctacaaacttcaatagcccagaattgacttagt |
314 |
Q |
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| T |
34791163 |
gatttttctcaaatgttggtctctgttgcatactttttcttgaataagaaactacattattcctctgctacaaacttcaatagcccagaattgacttagt |
34791064 |
T |
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| Q |
315 |
tgctttgcttgacttaagcttaagctacagtatttgctggttata |
359 |
Q |
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| T |
34791063 |
tgctttgcttgacttaagcttaagctacagtatttgctggttata |
34791019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 2287611 - 2287730
Alignment:
| Q |
195 |
ttcacaattttaggaatgcagatttttctcaaatgttggtctctgttgcatactttttcttgaataagaaactacattattcctctgctacaaacttcaa |
294 |
Q |
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| T |
2287611 |
ttcacaattttaggaaagcagatttatctcaaatgttgttctctgttgcgtactttttcttaaataagaaactacatt-----tctgttacaaactttaa |
2287705 |
T |
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| Q |
295 |
tagcccagaattgacttagttgctt |
319 |
Q |
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| T |
2287706 |
taacccaaaattgacttagctgctt |
2287730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 2287527 - 2287604
Alignment:
| Q |
54 |
agaatctaaacgtgtaacacagt-aaagttgtagttattgacatatgtacacactcaataattgac-tttggtaccgacc |
131 |
Q |
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||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||| |||||| ||||||||||||| |
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| T |
2287527 |
agaatctaaacatgtaacacagtaaaagttgtagttatgaacatatgt--acactcaatgattgacttttggtaccgacc |
2287604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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