View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_high_35 (Length: 256)
Name: NF6579_high_35
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31111728 - 31111636
Alignment:
| Q |
1 |
tgaaagaattatgcttggtgatttttgctttgcacgttcttgtagagaaaaggcgatggaaattgttgaggacgaatggctaaagtttaaaga |
93 |
Q |
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| T |
31111728 |
tgaaagaattatgcttggtgatttttgctttgcacgttcttgtagagaaaaggcgatggaaattgttgaggacgaatggctaaagtttaaaga |
31111636 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 31109629 - 31109558
Alignment:
| Q |
171 |
agaacttttaaataatgataaattcttaatcttttgcatttctcaacaaagaggtt-acattttagcctatg |
241 |
Q |
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| T |
31109629 |
agaacttttaaataatgataaattcttaatcttttgcatttctcaacaaagaggttaacattttagcctatg |
31109558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 4689002 - 4688961
Alignment:
| Q |
172 |
gaacttttaaataatgataaattcttaatcttttgcatttct |
213 |
Q |
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| T |
4689002 |
gaactttttaataatgataaaattttaatcttttgcatttct |
4688961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 38926194 - 38926235
Alignment:
| Q |
172 |
gaacttttaaataatgataaattcttaatcttttgcatttct |
213 |
Q |
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| T |
38926194 |
gaacttttatataatgataaaatcttaatcttttacatttct |
38926235 |
T |
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