View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6579_high_4 (Length: 597)

Name: NF6579_high_4
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6579_high_4
NF6579_high_4
[»] chr5 (4 HSPs)
chr5 (17-547)||(38099364-38099895)
chr5 (267-416)||(23257090-23257239)
chr5 (267-358)||(37268316-37268407)
chr5 (309-376)||(12851455-12851522)
[»] chr4 (8 HSPs)
chr4 (309-378)||(135895-135964)
chr4 (267-358)||(13159702-13159793)
chr4 (267-399)||(46191198-46191331)
chr4 (267-339)||(135824-135895)
chr4 (267-359)||(26893329-26893420)
chr4 (267-370)||(20177381-20177484)
chr4 (267-368)||(36825781-36825882)
chr4 (267-347)||(21141919-21141999)
[»] chr7 (4 HSPs)
chr7 (267-358)||(14241280-14241371)
chr7 (267-357)||(42453622-42453712)
chr7 (267-393)||(41242166-41242293)
chr7 (267-312)||(7566947-7566992)
[»] chr1 (2 HSPs)
chr1 (267-358)||(10349520-10349611)
chr1 (267-395)||(12396338-12396462)
[»] chr3 (2 HSPs)
chr3 (267-350)||(30188546-30188629)
chr3 (267-368)||(7638888-7638990)
[»] chr2 (3 HSPs)
chr2 (267-357)||(17607636-17607726)
chr2 (267-349)||(2220100-2220182)
chr2 (267-357)||(33006692-33006781)
[»] chr8 (1 HSPs)
chr8 (267-356)||(15172800-15172889)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 547
Target Start/End: Complemental strand, 38099895 - 38099364
Alignment:
Q  17 atatcattaacttactttaaataaaatgaaatgttagatcccctgtaacaaatgaagtaatttgtatgcaata---tatcaacatgannnnnnnn----- 108  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||| |                 
T  38099895 atatcattaacttactttaaatcaagtgaaatgttagatcccctgtaataaatgaagtaatttgtatgcaataatatatcaacataattttttttttttt 38099796  T
Q  109 -aacacatttgtcaaatcacgtctctaacatatatgagtttctaacttacatttaactattgatctcnnnnnnnnnnnnnnnnnncttacatttaactaa 207  Q
     |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||                  || ||||||||||||    
T  38099795 taacacatttgtcaaatcacgtctcta-catatatgagttcctaacttacatttatctattgatctcaaagaaaaaaaaaaa---ctaacatttaactaa 38099700  T
Q  208 aattatgcatctacttaattttaactaaaaatatannnnnnnnnnnnnnnnnnnnaacaaaatcaaaatagaatgtattgctcaaacaaaaaatgattca 307  Q
    |||||||||||||||||||||||||||||||||||                    |||||| ||||||| |||| |||| |||||||||||| |||||||    
T  38099699 aattatgcatctacttaattttaactaaaaatatattttttactatttttttt--aacaaa-tcaaaatggaatatattactcaaacaaaaa-tgattca 38099604  T
Q  308 ccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaaccaaggcaccaacaaaacggatgcctccaccaaaaaataaataattaaa 407  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38099603 ccccgcacaaggtgtgataagagtgatgaataacacaatatctattacaaaccaaggcaccaacaaaacggatgcctccaccaaaaaataaataattaaa 38099504  T
Q  408 ttacatgaccactattttgaattaatattaactaaatgttaatttagtaactaaatactttcttcacaaataacatcctgaccactatttttcccttcaa 507  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  38099503 ttacatgaccactattttgaattaatattaaccaaatgttaatttagtaactaaatactttcttcacaaataacaccccgaccactatttttcccttcaa 38099404  T
Q  508 ttggttttatacaccattatatgacaatgaacaccaacaa 547  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38099403 ttggttttatacaccattatatgacaatgaacaccaacaa 38099364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 416
Target Start/End: Complemental strand, 23257239 - 23257090
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattaca-aaccaaggc 365  Q
    |||||||||| |||| ||||| |||||| |||| |||||||||||| |||| ||||  ||| |  |||||||||| ||||||||  |||| || ||||||    
T  23257239 aaatcaaaatggaatatattgttcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaaccgatgaatcacccaatatctgctacacaaacaaggc 23257140  T
Q  366 accaacaaaacggatgcctccaccaaaaaataaataattaaattacatgac 416  Q
    |||||   || ||||||| ||||||||||||||| ||  ||||||||||||    
T  23257139 accaaaccaaaggatgccaccaccaaaaaataaa-aagaaaattacatgac 23257090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 37268407 - 37268316
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaa 358  Q
    |||||||||| |||| |||||||||||  |||| ||||||||||||||||| ||||  ||| ||||| ||||||| |||  ||| |||||||    
T  37268407 aaatcaaaatggaatatattgctcaaaggaaaagtgattcaccccgtacaaggtgtgctaaaagtgacgaatcactcaaagtctgttacaaa 37268316  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 12851455 - 12851522
Alignment:
Q  309 cccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaaccaaggcaccaacaaaac 376  Q
    |||| |||| |||| |||||| |||||||||||||| ||||  ||| ||||||||| |||||||||||    
T  12851455 cccgcacaaggtgtgataagaatgatgaatcacacagtatcagttaaaaaccaaggtaccaacaaaac 12851522  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 135895 - 135964
Alignment:
Q  309 cccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaaccaaggcaccaacaaaacgg 378  Q
    ||||||||| ||||  ||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  135895 cccgtacaaggtgtgctaagagtgatgaatcacacaatatctgctacaaaccaaggtaccaacaaaacgg 135964  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 13159702 - 13159793
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaa 358  Q
    |||||||||| |||| |||||||||||| |||| |||||||||||| |||||||||  ||| |||| ||||||||| ||||| | |||||||    
T  13159702 aaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaaagtgtgctaaaagtggtgaatcacaaaatatatgttacaaa 13159793  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 399
Target Start/End: Original strand, 46191198 - 46191331
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaa-accaaggc 365  Q
    |||||||||| |||| |||||||||||| |||| |||||||||||| |||| ||||  ||| | |||||| ||||  ||||||| |||||| |  |||||    
T  46191198 aaatcaaaatggaatatattgctcaaacgaaaagtgattcaccccgcacaatgtgtgctaaaaatgatgactcactgaatatctgttacaagaaaaaggc 46191297  T
Q  366 accaacaaaacggatgcctccaccaaaaaataaa 399  Q
    |||||   || ||||||| |||||||||||||||    
T  46191298 accaaaccaaaggatgccaccaccaaaaaataaa 46191331  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 135824 - 135895
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatc 339  Q
    |||||||||| |||| |||||||||||| |||  ||||||||||||||||| ||||  |||||||||||||||    
T  135824 aaatcaaaatggaatatattgctcaaacgaaag-tgattcaccccgtacaaggtgtgctaagagtgatgaatc 135895  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 26893420 - 26893329
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaac 359  Q
    |||||||||| ||||||||||||||||  |||  | |||||||| | |||| ||||  ||| ||||||||||||| ||| |||||||||||||    
T  26893420 aaatcaaaatggaatgtattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaa-agtgatgaatcacccaacatctattacaaac 26893329  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 20177381 - 20177484
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaaccaaggca 366  Q
    |||||||||| |||| |||||||||| | |||| ||||||||| || ||||  | |  ||| |||||||||||||| |||||||  |||||| || ||||    
T  20177381 aaatcaaaatcgaatatattgctcaatcgaaaagtgattcacctcgcacaagatatgttaaaagtgatgaatcacataatatctgatacaaaacatggca 20177480  T
Q  367 ccaa 370  Q
    ||||    
T  20177481 ccaa 20177484  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 36825781 - 36825882
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaa-tgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaaccaaggc 365  Q
    |||||||||| |||| ||||||||  || ||||  |||||||||||||| || ||||  ||| ||||||||||||| ||| |||| | ||||||||||||    
T  36825781 aaatcaaaatggaatatattgctcgcacgaaaaggtgattcaccccgtataaggtgtgttaa-agtgatgaatcacccaaaatctgtgacaaaccaaggc 36825879  T
Q  366 acc 368  Q
    |||    
T  36825880 acc 36825882  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 21141999 - 21141919
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaata 347  Q
    ||||||||||||||| |||||||||||| |  | |||||||||||| |||| |  |  ||| |||| ||||||||||||||    
T  21141999 aaatcaaaatagaatatattgctcaaaccaggagtgattcaccccgcacaaggcatgttaaaagtggtgaatcacacaata 21141919  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 14241371 - 14241280
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaa 358  Q
    ||||||||||  ||| ||||||| |||| |||| |||||||||||| ||||  |||  ||| |||||||||||||||||||||| |||||||    
T  14241371 aaatcaaaatgaaatatattgctaaaacgaaaagtgattcaccccgcacaagatgtgctaaaagtgatgaatcacacaatatctgttacaaa 14241280  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 42453712 - 42453622
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaa 357  Q
    |||| ||||| |||| |||||||||||| || | |||||||||||| | || ||||  ||| |||||||||||| ||||||||| ||||||    
T  42453712 aaataaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatcatacaatatctgttacaa 42453622  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 41242166 - 41242293
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaac-caaggc 365  Q
    |||||||||| |||| |||| ||||||| |||| |||||||||||| |||| ||||  ||| | |||||||||||   |||||| ||||| || ||||||    
T  41242166 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcacaaggtgtgctaaaattgatgaatcactagatatctgttacagacacaaggc 41242265  T
Q  366 accaacaaaacggatgcctccaccaaaa 393  Q
    ||| |  |||  |||||| |||||||||    
T  41242266 acctagcaaaaagatgccgccaccaaaa 41242293  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 7566947 - 7566992
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccg 312  Q
    |||||||||| |||| |||||||||||  |||||||||||||||||    
T  7566947 aaatcaaaatggaatatattgctcaaaggaaaaatgattcaccccg 7566992  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 10349611 - 10349520
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaa 358  Q
    |||||||||| |||| ||||||||||||  ||| |||||||||| | |||| ||||  ||| |||||||||||||| ||||||| |||||||    
T  10349611 aaatcaaaatggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcacaaaatatctgttacaaa 10349520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 395
Target Start/End: Original strand, 12396338 - 12396462
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaaccaaggca 366  Q
    ||||||| ||||||| ||| |||||||| |||  |||||||||| | |||| ||||  |||||||||||||||| ||||||||   |||||||||||| |    
T  12396338 aaatcaagatagaatatat-gctcaaacgaaag-tgattcaccc-gcacaaggtgtgctaagagtgatgaatcatacaatatccgctacaaaccaaggta 12396434  T
Q  367 ccaacaaaacggatgcctccaccaaaaaa 395  Q
    |||||||||||| | || |||||||||||    
T  12396435 ccaacaaaacgg-taccaccaccaaaaaa 12396462  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 30188629 - 30188546
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatct 350  Q
    |||| |||||||||| |||||||||||| |||  |||||||||||| || |  |||  ||||||||||||||||||||| ||||    
T  30188629 aaataaaaatagaatatattgctcaaacgaaaggtgattcaccccgcactagatgtgctaagagtgatgaatcacacaaaatct 30188546  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 7638888 - 7638990
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaaac-caaggc 365  Q
    |||||||||| |||| |||| ||||||| |||| |||||||||||| | || ||||  ||| |||||||||||||   |||||| |||||||| ||||||    
T  7638888 aaatcaaaatggaatatattactcaaacgaaaagtgattcaccccgcataaggtgtactaaaagtgatgaatcactagatatctgttacaaacacaaggc 7638987  T
Q  366 acc 368  Q
    |||    
T  7638988 acc 7638990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 17607726 - 17607636
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaa 357  Q
    |||| ||||| |||| ||||||||||||  | | ||||||||| || |||| ||||  ||| |||||||||||||||||||||| ||||||    
T  17607726 aaataaaaatggaatatattgctcaaacggacagtgattcacctcgcacaaggtgtgttaaaagtgatgaatcacacaatatctgttacaa 17607636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 2220100 - 2220182
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatc 349  Q
    |||||||||| || | |||||||||||| |||| ||||||||| | |||||  |||  ||| |||||||||||||| ||||||    
T  2220100 aaatcaaaatggattatattgctcaaacgaaaagtgattcacctcatacaagatgtgctaaaagtgatgaatcacataatatc 2220182  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 33006692 - 33006781
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattacaa 357  Q
    ||||||||||| ||| |||| ||||||   ||| ||||||||| ||||||| ||||| ||| |||||||||||||  ||||||| ||||||    
T  33006692 aaatcaaaataaaatatattactcaaaagtaaagtgattcacctcgtacaaggtgtcctaa-agtgatgaatcacctaatatctcttacaa 33006781  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 15172889 - 15172800
Alignment:
Q  267 aaatcaaaatagaatgtattgctcaaacaaaaaatgattcaccccgtacaaagtgtcataagagtgatgaatcacacaatatctattaca 356  Q
    |||| ||||| |||| |||| ||||||| || | |||||||||||| ||||  |||  ||| |||||||||||||| ||||||| |||||    
T  15172889 aaattaaaatggaatatatttctcaaacgaagagtgattcaccccgaacaatatgtgctaaaagtgatgaatcacataatatctgttaca 15172800  T

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