View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_high_42 (Length: 239)
Name: NF6579_high_42
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 31111826 - 31112040
Alignment:
| Q |
9 |
gaagaatatcaatataaaatttctgctgcaaatgtgacttaaattaaggtcgttcaacgaaatcaacaaaccgccactccaatgaatgtggtagaaaatg |
108 |
Q |
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| T |
31111826 |
gaagaaaatcaatataaaatttctgctgcaaatgtgacttaaattaaggtcgttcaacgaaatcaacaaaccgccactccaatgaatgtggtagaaaatg |
31111925 |
T |
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| Q |
109 |
ttgcttctgagaaagatgaaaatcaggatccatggcacaaagttccttcttctcctcgttgcggaggatctcctttgcacgattcagacggaggcgtaag |
208 |
Q |
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| T |
31111926 |
ttgcttctgagaaagatgaaaatcaggatccatggcacaaagttcctttttctcctcgttgcggaggatctcctttgcacgattcagacggaggcgtaag |
31112025 |
T |
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| Q |
209 |
cagtcacactccttc |
223 |
Q |
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| T |
31112026 |
cggtcacactccttc |
31112040 |
T |
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