View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6579_high_44 (Length: 230)
Name: NF6579_high_44
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_high_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 8218766 - 8218962
Alignment:
| Q |
17 |
agtttttgagaatatgagaatatatatagtacattcaactagtatatagagtatgtaaagctagcacttcaacaggcccctccgaataacaaatactttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8218766 |
agtttttgagaatatgagaatatatatagtacattcaactagtatatagagtatgtaaagctagcacttcaacaggcccctccgaataacaaatactttt |
8218865 |
T |
|
| Q |
117 |
caattcctttttctctaaattctacaaaactgtgtttttccagtagaatataattagtcattaaagtaaatcaactcaatccaattagtagcatatt |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8218866 |
caatttctttttctctaaattctacaaaactgtgtttttccagtagaatataattagtcgttaaagtaaatcaactcaatccaattagtagcatatt |
8218962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University