View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6579_high_5 (Length: 516)

Name: NF6579_high_5
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6579_high_5
NF6579_high_5
[»] chr1 (2 HSPs)
chr1 (16-499)||(25782262-25782745)
chr1 (216-300)||(26309246-26309331)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 25782745 - 25782262
Alignment:
Q  16 agatcatagtagcgtataaatagatatattttgtagggttttagctttgtgcactacttatatgtgtacttgtgaaatgagaaatgatgggtacttaata 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25782745 agatcatagtagcgtataaatagatatattttgtagggttttagctttgtgcactacttatatgtgtacttgtgaaatgagaaatgatggatacttaata 25782646  T
Q  116 cttatagtgtatagtgtgagttaaggtgcaagttgaaatgaatgattatttcattttcattttcttcaatccactatctagcacttgattaatggcccca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25782645 cttatagtgtatagtgtgagttaaggtgcaagttgaaatgaatgattatttcattttcattttcttcaatccactatctagcacttgattaatggtccca 25782546  T
Q  216 cttggatcatggttgacgcacgattttgacctgttaccaaaatatgatgatcattcgagcaagattttatattaaatcattttattttatacaataatga 315  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25782545 cttggatcatggttgacgcacgattttgacctgttaccaaagtatgatgatcattcgagcaagattttatattaaatcattttattttatacaataatga 25782446  T
Q  316 tgacttttttggatggatgctgattttatataatggtttattatttagcaatattttaataatggtgaaaagaccaatgtaacgaataatttaatggaaa 415  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25782445 tgacttttttggatggatgctgatttaagataatggtttattatttagcaatattttaataatggtgaaaagaccaatgtaacgaataatttaatggaaa 25782346  T
Q  416 taaataaagagtttccctacaaacgtacgtaacaaataaattaagagaaatgattgtgtttaaaggcttggctctgcagatttt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  25782345 taaataaagagtttccctacaaacgtacgtaacaaataaattaagagaaatgattgtgtttaaaggcttggctgtgcacatttt 25782262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 26309331 - 26309246
Alignment:
Q  216 cttggatcatggttgacgcacgattttgacctgttaccaaaatatgatgatcattcgagcaagattttatat-taaatcattttat 300  Q
    |||| ||||||||||||||||||  |||||||| ||||||||| || |||||||||||||||| |||||||| |||||||| ||||    
T  26309331 cttgcatcatggttgacgcacgaccttgacctgctaccaaaatgtgttgatcattcgagcaagcttttatatataaatcatgttat 26309246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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