View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_high_6 (Length: 511)
Name: NF6579_high_6
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 10880048 - 10879568
Alignment:
| Q |
19 |
gggattgttagttatttctactttaactaccacactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacacca |
118 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10880048 |
gggattgttagttatttctactataactaccatactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacacca |
10879949 |
T |
|
| Q |
119 |
cctggcccatgcactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgtatcttttctggaaggaaattctacatagccat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
10879948 |
cctggcccatgcactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgtatcttttctagaagcaaattctacatagccat |
10879849 |
T |
|
| Q |
219 |
cattaaacaaatcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaatgacttgacatccactgccatctt |
318 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
10879848 |
cattaaacaaagcaacatgcatagatgttggcttttgctgataggaaactccatcaaactt---ctcgtctattaataacttgacatccactgccatctt |
10879752 |
T |
|
| Q |
319 |
ctttgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttggcatggcctttatcatcttgaaacttctcc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10879751 |
ctttgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttcgcatggcctttatcatcttgaaacttctcc |
10879652 |
T |
|
| Q |
419 |
gtttcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagcttcatct |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10879651 |
gtttcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctttatct |
10879568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 10848655 - 10848172
Alignment:
| Q |
19 |
gggattgttagttatttctactttaactaccacactgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacacca |
118 |
Q |
| |
|
|||||||| | ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10848655 |
gggattgtcatttatttctactataactgccacattgaacaacttcttgacttgagctttcttaacaatttctttgattaaagtgctcttacccacacca |
10848556 |
T |
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| Q |
119 |
cctggcccatgcactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgtatcttttctggaaggaaattctacatagccat |
218 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| | |||| ||| ||||||||||||||||| |
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| T |
10848555 |
cctggcccatgcactccaatcattctcgctgtagaatcttctagtttttccattatcctttcaattgtgcatgttctagaaccaaattctacatagccat |
10848456 |
T |
|
| Q |
219 |
cattaaacaaatcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaatgacttgacatccactgccatctt |
318 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10848455 |
cattaaacaaagcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaataacttgacatccactgccatctt |
10848356 |
T |
|
| Q |
319 |
ctttgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttggcatggcctttatcatcttgaaacttctcc |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||| |
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| T |
10848355 |
ctttgcttttctccctagtctatgtctgttcctcaggtaatgaaataaaccactggaaaaccttgtcttcgtgtggccttcatcatcttgaaactcctcc |
10848256 |
T |
|
| Q |
419 |
gtttcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagcttcatct |
502 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10848255 |
gtttcagttctagttttatccactttctgaagccaagctgcaacattactttcggttattcctagattatcctcagcttcatct |
10848172 |
T |
|
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