View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6579_low_1 (Length: 775)
Name: NF6579_low_1
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 8e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 539 - 770
Target Start/End: Complemental strand, 14658875 - 14658646
Alignment:
| Q |
539 |
aagaatcctaggcttataagtctaacttcttatgtgaaactctccaattatatgtgacccaagagtaaccagcagcaacgtaaatgtatttacactgaaa |
638 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
14658875 |
aagaatcctagacttacaagtcttacttcttatgtgaaactctccaataat--gtgacccaagagtaaccagcaacaatgtaaatgtatttatactgaaa |
14658778 |
T |
|
| Q |
639 |
tcaattttgtagaatcaagatcatgtaaaatcaaatttataaacatacataatggtttttagctaaaaggaatatcaattaggtcagaagtaacttagtg |
738 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
14658777 |
tcaattttgtagaatcaagatcatgcaaaatcaaatttataagcatacataatgatttttagctaaaaagaatatcaattaggtcaaaagtaacttagta |
14658678 |
T |
|
| Q |
739 |
ctatgatcatcgaatatgtgccctttgcttct |
770 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
14658677 |
ctatgatcatcgaatatgtgccctttgtttct |
14658646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 369 - 560
Target Start/End: Complemental strand, 14659950 - 14659762
Alignment:
| Q |
369 |
tccatttaaataactcaattatttatcaac-cgtgtaacactatattaattaatgcgcataagtttgagtctatagtagtgttataatatgactgatgaa |
467 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14659950 |
tccatttaaataacccaatgatttatcaacgcgtttaacactatattaattaatgcgcataagtttgagtctataatagtgttataatatgactgatgaa |
14659851 |
T |
|
| Q |
468 |
atttgtattgtatgtgcagtgtgcacaagtccaaagggagaatatatacaaaagattagtttattgggtgaaagaatcctaggcttataagtc |
560 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
14659850 |
atttgt----tatgtgcactgtgcacaagtccaaagggagaatatatacaaaagattagtatattgggtgaaagaatcctaggataataagtc |
14659762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 14662865 - 14662799
Alignment:
| Q |
104 |
attacatcatatcaatgtattttaggttaaggatctttactctcattctttttacatgtattctttt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14662865 |
attacatcatatcaatgtattttaggttaaggatctttactctcattctttttacatgtattctttt |
14662799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 14663042 - 14662998
Alignment:
| Q |
21 |
aggataattgaacaattttagagaatgaagaactctatatttaat |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14663042 |
aggataattgaacaattttagagaatgaagaactctatatttaat |
14662998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 195
Target Start/End: Complemental strand, 14662757 - 14662727
Alignment:
| Q |
165 |
tcttttgaatcataacaattgatcttttttc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14662757 |
tcttttgaatcataacaattgatcttttttc |
14662727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 43574177 - 43574134
Alignment:
| Q |
18 |
aagaggataattgaacaattttagagaatgaagaactctatatt |
61 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
43574177 |
aagaagataattgaacaaatttagagaatgaataactctatatt |
43574134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University