View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_10 (Length: 461)
Name: NF6579_low_10
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 35206558 - 35206128
Alignment:
| Q |
18 |
aagccataacaaaactgaaaccaggtgcacagcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagat |
117 |
Q |
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| T |
35206558 |
aagccataacaaaactgaaaccaggtgcacagcagagatgttaaactacataacaccggatgattaccgttgtccgatttctctggaactaatgacagat |
35206459 |
T |
|
| Q |
118 |
cctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactca |
217 |
Q |
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| T |
35206458 |
cctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaaacatgacatgtccaaaaacaggagaaagactca |
35206359 |
T |
|
| Q |
218 |
tttccactgagctttttcccaacacagcacttaaaacacttatccaacagttctgttatgataacaaaatttcagtttcaacatccaagctccacatcag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35206358 |
tttccactgagctttttcccaacacagcacttaaaacacttatccaacagttctgttatgataacaaaatttcagtttcaacatccaagctccacatcag |
35206259 |
T |
|
| Q |
318 |
caaacctgcagccacggttaatcccggtagtccagctgcagcacatgcgatacaattcacgtcatggtcattagctcggagactagttttcggaacagag |
417 |
Q |
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| T |
35206258 |
caaacctgcatccacggttaatcccggtagtccagctgcagcacatgcaatacaattcacgtcatggtcattagcccggagactagttttcggaacagag |
35206159 |
T |
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| Q |
418 |
gaacagaaaaataaagcagcttatgagattc |
448 |
Q |
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| T |
35206158 |
gaacagaaaaacaaagcagcttatgagattc |
35206128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 448
Target Start/End: Complemental strand, 43985869 - 43985827
Alignment:
| Q |
406 |
ttcggaacagaggaacagaaaaataaagcagcttatgagattc |
448 |
Q |
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| T |
43985869 |
ttcggaacagagcaacagaagaataaagcagcttacgagattc |
43985827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 43986190 - 43986069
Alignment:
| Q |
85 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
184 |
Q |
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|||||||| ||||| || ||||||||||| ||||| ||||| ||||| || || ||||| ||| | | | |||||||| | |||| |||||||||||| |
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| T |
43986190 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
43986091 |
T |
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| Q |
185 |
acatgacatgtccaaaaacagg |
206 |
Q |
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||| ||||| || |||||||| |
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| T |
43986090 |
acaaaacatgccctaaaacagg |
43986069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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