View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6579_low_11 (Length: 452)
Name: NF6579_low_11
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_11 |
 | |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 2152 - 1733
Alignment:
| Q |
17 |
tcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2152 |
tcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaa |
2053 |
T |
|
| Q |
117 |
ctctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2052 |
ctctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaactttct |
1953 |
T |
|
| Q |
217 |
ctaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
1952 |
ttaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatac |
1853 |
T |
|
| Q |
317 |
atcattttcataatcattctccaaatgacaagtagattccaaaattagtactaaatccataaaaattcattttctaaaaaatatcttctatagaaacaat |
416 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1852 |
attattttcatattcattctccaaatgacaagtagattccaaaattagtactaaatccatgaaaattcattttctaaaaaataacttctatagaaacaat |
1753 |
T |
|
| Q |
417 |
catataatataaccatattt |
436 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
1752 |
catataatataaccatattt |
1733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 8754 - 8335
Alignment:
| Q |
17 |
tcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8754 |
tcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaa |
8655 |
T |
|
| Q |
117 |
ctctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8654 |
ctctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaactttct |
8555 |
T |
|
| Q |
217 |
ctaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8554 |
ttaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatac |
8455 |
T |
|
| Q |
317 |
atcattttcataatcattctccaaatgacaagtagattccaaaattagtactaaatccataaaaattcattttctaaaaaatatcttctatagaaacaat |
416 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8454 |
attattttcatattcattctccaaatgacaagtagattccaaaattagtactaaatccatgaaaattcattttctaaaaaataacttctatagaaacaat |
8355 |
T |
|
| Q |
417 |
catataatataaccatattt |
436 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8354 |
catataatataaccatattt |
8335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 62 - 436
Target Start/End: Complemental strand, 17060186 - 17059812
Alignment:
| Q |
62 |
aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccat |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17060186 |
aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccat |
17060087 |
T |
|
| Q |
162 |
attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttg |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17060086 |
attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttg |
17059987 |
T |
|
| Q |
262 |
taaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagtagattccaaaat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17059986 |
taaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagtagattccaaaat |
17059887 |
T |
|
| Q |
362 |
tagtactaaatccataaaaattcattttctaaaaaatatcttctatagaaacaatcatataatataaccatattt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17059886 |
tagtactaaatccataaaaattcattttctaaaaaatatcttctatagaaacaatcatataatataaccatattt |
17059812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 397
Target Start/End: Original strand, 43262189 - 43262334
Alignment:
| Q |
252 |
taaattcttgtaaccaaatccaaatcatat--gcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagt |
349 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||| | || ||||||||| || | ||||||||||||| ||||||||| |||| |||| |
|
|
| T |
43262189 |
taaagtcttgtaaccaaatccaaaccatatatgcatcacaaactca--aactaaacaagtcttgtgcatcattttcatatccattctccacatgagaagt |
43262286 |
T |
|
| Q |
350 |
agattccaaaattagtactaaatccataaaaattcattttctaaaaaa |
397 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
43262287 |
agattccaaaattagtgctaaatccatgaaaattcattttctcaaaaa |
43262334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 260 - 376
Target Start/End: Complemental strand, 36229211 - 36229097
Alignment:
| Q |
260 |
tgtaaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagtagattccaaa |
359 |
Q |
| |
|
|||||| ||||||||| ||||||||||| | || | ||||||||||||| || | ||| ||||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
36229211 |
tgtaacgaaatccaaaccatatgcatcaga--ctcaaaaattaaacaagtcttgtgcattattttcatattcattctccacgtgagaagtagattccaaa |
36229114 |
T |
|
| Q |
360 |
attagtactaaatccat |
376 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36229113 |
attagtactaaatccat |
36229097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 239 - 422
Target Start/End: Complemental strand, 48223273 - 48223089
Alignment:
| Q |
239 |
ttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctcc |
338 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48223273 |
ttcttcaaaaagttaaagtcttgtaaccaaatccaaatcatatgcagcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcc |
48223174 |
T |
|
| Q |
339 |
aaatgacaagtagattccaaaattagtactaaatccataaaaattcattttctaa-aaaatatcttctatagaaacaatcatata |
422 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
48223173 |
agatgacaagtagattccaaaattagtactaaatccatgaaaattcattttctaaaaaaataacttctatagaaacaatcatata |
48223089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 397
Target Start/End: Complemental strand, 48223555 - 48223411
Alignment:
| Q |
255 |
attcttgtaaccaaatccaaatcatat--gcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagtaga |
352 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||| ||| | |||||||||| | || ||||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
48223555 |
attctggtaaccaaatccaaaccatatatgcatcacagactaaacaattaaacaaatcttctacatcattttcatatacattctccacatgaggagtaga |
48223456 |
T |
|
| Q |
353 |
ttccaaaattagtactaaatccataaaaattcattttctaaaaaa |
397 |
Q |
| |
|
|| |||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
48223455 |
ttacaaaattagtactaaatctatgaaaattcattttctcaaaaa |
48223411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 21990462 - 21990540
Alignment:
| Q |
11 |
acatcatcatcccctatatatcaag-cccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaa |
88 |
Q |
| |
|
||||| ||||||||||||||| | | ||||||||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
21990462 |
acatcttcatcccctatatataagggcccataaacaataaacagattaggagaaaagagttaacaaaatgcaatagtaa |
21990540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 5523996 - 5523931
Alignment:
| Q |
115 |
aactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacat |
180 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||| ||||| |
|
|
| T |
5523996 |
aactctttctatacttgatgctcaaaccttattgaagattaaaccatattgaagagtaaaaaacat |
5523931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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