View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6579_low_13 (Length: 426)
Name: NF6579_low_13
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 5972844 - 5973065
Alignment:
| Q |
11 |
catcatcacatcacattcttcaaactcaaaacaaagatctttacatttttcccaaaaataattcctaactttgcattaattgaattgaaata-----taa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5972844 |
catcatcacatcacattcttcaaactcaaaacaaagatttttacatttttcccaaaaaaaattcctaactttgcattaattgaattgaaatactccataa |
5972943 |
T |
|
| Q |
106 |
caaagaaacccaaaacccaaacctaccctacacacaacaacgaccactttatcttatttaatcacaacccttaaactatctttccattttcatcttccct |
205 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5972944 |
caaagaaacccaaaaaccaaacctaccctacacacaacaacgaccactttatcttatttaatcacaacccttaacatatctttccattttcatcttccct |
5973043 |
T |
|
| Q |
206 |
cattactcattaccatttactt |
227 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5973044 |
cattactcattaccatttactt |
5973065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 277 - 408
Target Start/End: Original strand, 5973115 - 5973246
Alignment:
| Q |
277 |
atgtaactgtttccataatatcaatttaattccaattccaacgttacccttttggataaatgtactctaagcactgaaaagtttcaatctttacttgttt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5973115 |
atgtaactgtttccataatatcaatttaattccaattccaacgttacccttttggataaatgtactctaagcactgaaaagtttcaatctttacttgttt |
5973214 |
T |
|
| Q |
377 |
tgattgaatagagaaaaacccagatggatttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5973215 |
tgattgaatagagaaaaacccagatggatttt |
5973246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University