View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_14 (Length: 401)
Name: NF6579_low_14
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_14 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 385
Target Start/End: Complemental strand, 33681125 - 33680756
Alignment:
| Q |
21 |
ttatgtctctttaaatggcgaaatcaatcatgatacacacaaaattcataaacccatgagacaaatccaaaaatatccaccatgataaacggcatttata |
120 |
Q |
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| T |
33681125 |
ttatgtctttttaaatggcggaatcaatcatgatacacacaaaattcataaacccatgagacaaatccaaaaatatccaccatgataaacggcatttata |
33681026 |
T |
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| Q |
121 |
tttcaactagaaaccaatacaaatgctgggtgaatcggtcgatcacttaactatatatattgcacctatagtatgacttatgagattagaaaaagattat |
220 |
Q |
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| T |
33681025 |
tttcaactagaaaccaatacaaatgctgggtgagtcggtcgatcacttaactatatatattgcacctatagtatgacttatgagattagaaaaagattat |
33680926 |
T |
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| Q |
221 |
ggtacaaatttatttatttgaaagttgcggcatttatattgcatcgttgtgattgtctaa---nnnnnnnnnaacaaattaaaatggaatataatattaa |
317 |
Q |
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| T |
33680925 |
ggtacaaatttatttatttgaaagttgcggcatttatactgcatcgttgtgattgtctaattttttttttttaagaagtcaaaatggaatataatattaa |
33680826 |
T |
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| Q |
318 |
accaagagtgaatccccccgcacgaggcgtgct--gagagagactcactcagaaatgtacaaagtcacag |
385 |
Q |
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| T |
33680825 |
accaagagtgaatcaccccgcacaaggcgtactgagagagagactcactcagaaatgtacaaagtcacag |
33680756 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 37124942 - 37124880
Alignment:
| Q |
290 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggcgtgctga |
352 |
Q |
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| T |
37124942 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcactctgcacaaggcgtgctga |
37124880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 248088 - 248033
Alignment:
| Q |
290 |
aacaaattaaaatggaatataatattaaaccaagagtgaatccccccgcacgaggc |
345 |
Q |
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| T |
248088 |
aacaaatcaaaatggaatataatattaaaccaaaagtgattcgctccgcacaaggc |
248033 |
T |
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