View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_15 (Length: 401)
Name: NF6579_low_15
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 7e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 198 - 395
Target Start/End: Complemental strand, 32149216 - 32149020
Alignment:
| Q |
198 |
gaggtctttatatttacggagagttgaatagatagtttggtgttttagggcggaatcatgcatgaattggaagaatctttagtacacttggaaggttggg |
297 |
Q |
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| T |
32149216 |
gaggtctttatatttaaggagagttgaatagatactttggtgttttagggcggaatcatgcatgaattggaagaatctt-attacacttggaaggttggg |
32149118 |
T |
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| Q |
298 |
ttgacttgtgagtttaatttaaatatgctatgttatgcaattctatccattagaaagggatgctggaaagcactaaaaatgcagtttttgatgatgtc |
395 |
Q |
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| T |
32149117 |
ttgacttgtgagtttaatttaaatatgctatgttatgcaattctatccattagaaagggatgctggaaagcactaaaaatgcagtttttgatgatgtc |
32149020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 32149347 - 32149231
Alignment:
| Q |
95 |
cctctctaattttataccattcaaaataattggtgacacgtctattgnnnnnnnaaataatgagccgtatatcaaaattgtacttaagttgtccctttat |
194 |
Q |
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| T |
32149347 |
cctctctaattttataccattcaaaataattggtgacacgtctattgtttttttaaataatgagccgtatatc-aaattgtacttaagttgtccctttat |
32149249 |
T |
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| Q |
195 |
tttgaggtctttatattt |
212 |
Q |
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| T |
32149248 |
tttgaggtctttatattt |
32149231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 329
Target Start/End: Complemental strand, 32150283 - 32150120
Alignment:
| Q |
169 |
aaattgtacttaagttgtccctttatttt-gaggtctttatatttacggagagttgaatagatagtttggtgt--tttagggcggaatcatgcatgaatt |
265 |
Q |
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| T |
32150283 |
aaattgtacttaagttgaccctttattttagaactctttatatttaaggagagaggcaaagataatttggtgtgttttagggaggaatcatgcatgaatt |
32150184 |
T |
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| Q |
266 |
ggaagaatctttagtacacttggaaggttgggttgacttgtgagtttaatttaaatatgctatg |
329 |
Q |
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| T |
32150183 |
agaagaatctctaacacaattggaaggttaggttgacttctgcatttaatttaaacatgttatg |
32150120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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