View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6579_low_2 (Length: 758)

Name: NF6579_low_2
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6579_low_2
NF6579_low_2
[»] chr4 (5 HSPs)
chr4 (109-314)||(4880520-4880734)
chr4 (109-256)||(4903644-4903794)
chr4 (680-751)||(4880325-4880396)
chr4 (68-253)||(3955344-3955531)
chr4 (103-193)||(47249366-47249456)
[»] chr1 (1 HSPs)
chr1 (103-193)||(25623714-25623804)
[»] chr3 (1 HSPs)
chr3 (103-193)||(10533276-10533366)
[»] chr6 (2 HSPs)
chr6 (130-198)||(28495155-28495223)
chr6 (130-198)||(29807564-29807632)
[»] chr5 (1 HSPs)
chr5 (209-256)||(39261490-39261537)
[»] scaffold0009 (1 HSPs)
scaffold0009 (103-193)||(92022-92112)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 109 - 314
Target Start/End: Complemental strand, 4880734 - 4880520
Alignment:
Q  109 gagactatctc-gaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatactcggac--t 205  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||       
T  4880734 gagactatctcagaaaatcgtgaaagagttgcagtggaagttccttcgtgaagatgtcaacaatttggtaataagaaggaacatgtaatactcggacctc 4880635  T
Q  206 actatgagcaactttttcacacacaaaaagaatatccatctcgatgtgc------ttcaaaagttgatgttgaacggcgttattggaaggataaactaca 299  Q
    |  |  ||||||||| |||| ||||||| ||||||||||||||||||||      ||| || ||||||||||||||| ||| |   ||||||||||||||    
T  4880634 aacacaagcaactttctcacgcacaaaatgaatatccatctcgatgtgctttgaattcgaacgttgatgttgaacggggttgtcataaggataaactaca 4880535  T
Q  300 cttaaattatcacaa 314  Q
    |||| ||||||||||    
T  4880534 cttacattatcacaa 4880520  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 109 - 256
Target Start/End: Complemental strand, 4903794 - 4903644
Alignment:
Q  109 gagactatctc-gaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatactcggac--t 205  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |       
T  4903794 gagactatctcagaaaatcgtgaaagagttgcagtggaagttccttcgtgaagatgtcaacaatttggtaataagaaggaacatgtaatactcggtcctc 4903695  T
Q  206 actatgagcaactttttcacacacaaaaagaatatccatctcgatgtgctt 256  Q
    |  |  ||||||||| |||| ||||||||||||||||||||||||||||||    
T  4903694 aacacaagcaactttctcacgcacaaaaagaatatccatctcgatgtgctt 4903644  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 680 - 751
Target Start/End: Complemental strand, 4880396 - 4880325
Alignment:
Q  680 aaagaatacaatcatagactatttgaccaactattgttccaacacaaaccaattgcttccctattcatctct 751  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  4880396 aaagaatacaatcatagactatttgaccaactattgttccaacacaaaccaactgcttcgctattcatctct 4880325  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 68 - 253
Target Start/End: Complemental strand, 3955531 - 3955344
Alignment:
Q  68 taatacaccctcctaattgaaccaggaggtggagaaatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaa 167  Q
    |||||||||| | || ||||| | |||||| ||  ||||| ||||||||| |||||||| | |||||||||||  |||||| | || |||| |||||||     
T  3955531 taatacacccccgtagttgaaacgggaggttgacgaatgttgagactatcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcag 3955432  T
Q  168 caatttggtaacgagaaggaacatgttatactcggact--actatgagcaactttttcacacacaaaaagaatatccatctcgatgtg 253  Q
    | ||||||||||| ||||| |||||| | ||||| |||   | | | || ||||| |||| ||||||| | |||||||||||||||||    
T  3955431 cgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggcgactttctcacgcacaaaatgtatatccatctcgatgtg 3955344  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 47249366 - 47249456
Alignment:
Q  103 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 193  Q
    ||||| ||||||||| |||||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  47249366 aatgttgagactatcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 47249456  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 25623714 - 25623804
Alignment:
Q  103 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 193  Q
    ||||| |||||||||||||||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  25623714 aatgttgagactatctcgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 25623804  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 10533276 - 10533366
Alignment:
Q  103 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 193  Q
    ||||| ||||||||| |||||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  10533276 aatgttgagactatcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 10533366  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 28495155 - 28495223
Alignment:
Q  130 aaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatac 198  Q
    ||||||||| |||| |||  ||||||||| ||| ||||||| ||| |||||||||||||||||| ||||    
T  28495155 aaagagttgtagtgcaagccccttcgtgaagatatcaacaagttgataacgagaaggaacatgtaatac 28495223  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 29807564 - 29807632
Alignment:
Q  130 aaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatac 198  Q
    ||||||||| |||| |||  ||||||||| ||| ||||||| ||| |||||||||||||||||| ||||    
T  29807564 aaagagttgtagtgcaagccccttcgtgaagatatcaacaagttgataacgagaaggaacatgtaatac 29807632  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 39261490 - 39261537
Alignment:
Q  209 atgagcaactttttcacacacaaaaagaatatccatctcgatgtgctt 256  Q
    ||||||||||||||||| ||||||| |||||| |||||| ||||||||    
T  39261490 atgagcaactttttcacgcacaaaatgaatattcatctcaatgtgctt 39261537  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 92112 - 92022
Alignment:
Q  103 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 193  Q
    ||||| ||||||||| | |||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  92112 aatgttgagactatcacaaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 92022  T

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