View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_20 (Length: 362)
Name: NF6579_low_20
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 31980750 - 31980398
Alignment:
| Q |
1 |
tctctttctcttgtttcttctcacgctcagtactattggacttatccatcggtggtaccgaagaatgttgaatgcaatttgtgtttgtatattcaattaa |
100 |
Q |
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| T |
31980750 |
tctctttctcttgtttcttctcacgcttagtactattggacttatccatcagtggtaccgaagaatgttgaatgcaatctgtgtttgtatattcaattaa |
31980651 |
T |
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| Q |
101 |
tgagttagagctaccgggggaggagaagaagaagcgttgagaggcgaaggctgctgcaaaatctgctggctcaggttcgggttcaatttcgagatcgaaa |
200 |
Q |
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| T |
31980650 |
tgagttagagctaccgggggaggagaagaagaagcgttgagaggcgaaggctgctgcaaaatctgctggctcaggttcgggttcaatttcgagatcgaaa |
31980551 |
T |
|
| Q |
201 |
gaggttgatgtagtgaaggtggtagagagtgaagaagagcataaagtgtggtcagaggttaaggaagggtcatagagagagttgaaattcttgatcataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31980550 |
gaggttgatgtagtgaaggtggtagagagtgaagaagagcataaagtgtggtcagaggttaaggaagggtcatagagagagttgaaattcttgatcataa |
31980451 |
T |
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| Q |
301 |
ttgatggggaaggtgtagatgaagaaggcttttgaagaatttgatgatgatgt |
353 |
Q |
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| T |
31980450 |
ttgatggggaaggtgtagatgaagaaggcttttgaagaatttgatgatgatgt |
31980398 |
T |
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