View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_22 (Length: 353)
Name: NF6579_low_22
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 141 - 314
Target Start/End: Complemental strand, 5563566 - 5563392
Alignment:
| Q |
141 |
taagaaattaactaaaaagtatgtnnnnnnnn-gaaatagaaagtactttccttggttgttgaagcaagatcctgagtgcagagaaagacttgagcaatt |
239 |
Q |
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| T |
5563566 |
taagaaattaactaaaaagtatgtaaaaaaaaagaaatagaaagtactttccttgtttgttgaagcaagatcctgagtgcagagaaagacttgagcaatt |
5563467 |
T |
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| Q |
240 |
tttccatcagctctccttccttgttgaagaacttgaagagtgtgttacaccagctcaaaatggtctctacgatcc |
314 |
Q |
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| T |
5563466 |
tttccatcagctctccttccttgttgaagaacttgaagagtgtgttacaccagctcaaaatggtctctacgatcc |
5563392 |
T |
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Back To:
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 5563689 - 5563629
Alignment:
| Q |
19 |
gtgaatgaggtgaggaatgaagagaaaaggagcaaaatgagaaaggaaatgacaaagaccc |
79 |
Q |
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| T |
5563689 |
gtgaatgaggtgaggaatgaagagaaaaggagcaaaatgagaaaggaaatgacaaagaccc |
5563629 |
T |
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