View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_23 (Length: 350)
Name: NF6579_low_23
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 16456708 - 16457027
Alignment:
| Q |
21 |
accaaatacaaaaacctatcaagcaacacacaacattatatcaaatcaaatatacctaaacataatatttttgaagaataatcccttcaacaatctaaaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16456708 |
accaaatacaaaaacctatcaagcaacacacaacattatatcaaatcaaatatacctaaacataatatttttgaagaataatcccttcaacaatctaaaa |
16456807 |
T |
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| Q |
121 |
agtagaacttccaaattccatcaatacccaacttttattgcacaaattcttgctagtttaaattatacttccataagaaattccttatcttgctccaacc |
220 |
Q |
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| T |
16456808 |
agtagaacttccaaattccatcaatacccaacttttattgcacaaattcttgctagtttaaattatacttccataagaaattccttatcttgctccaacc |
16456907 |
T |
|
| Q |
221 |
ttcccatagcctcaggctccaatgttaattcaacatcaatgctccttcctccactcttccctggatacaagtaaatcattccatcaaatttgttattggt |
320 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16456908 |
ttcccatagcctcaggctctaatgttaattcaacatcaatgctcctccctccactcttccctggatacaaataaatcattccatcaaatttgttattggt |
16457007 |
T |
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| Q |
321 |
cccacttctcacaatctctg |
340 |
Q |
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|||||||||||||||||||| |
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| T |
16457008 |
cccacttctcacaatctctg |
16457027 |
T |
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