View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_24 (Length: 335)
Name: NF6579_low_24
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 23 - 317
Target Start/End: Complemental strand, 11169450 - 11169156
Alignment:
| Q |
23 |
gaatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaatggttgac |
122 |
Q |
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| T |
11169450 |
gaatcgttggttaccattattagccaaatattgtttcgagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaatgattgac |
11169351 |
T |
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| Q |
123 |
tttataaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaatttaagtgacaatgtcagtgatgaggatgtcacttgtgtaattttttaccgt |
222 |
Q |
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| T |
11169350 |
tttataaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaatttaagtgacaatgtcagtgatgaggatgtcacttgtgtaattttttaccgt |
11169251 |
T |
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| Q |
223 |
taaattgtaccattaaaccttcttgttgaatcacttaagtgatgacgatgtcagttgtgtaattttttatttataaaaaatctaaatgtcacact |
317 |
Q |
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| T |
11169250 |
taaattgtaccgttaaaccatcttgttgaatcacttaagtgatgacgatgtcagttgtgtaattttttatttataaaaaatctaaatgtcacact |
11169156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 11208272 - 11208108
Alignment:
| Q |
23 |
gaatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaatggttgac |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||| |
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| T |
11208272 |
gaatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctgcaacaggtgacatcaccgggatagtttcttctggaattgttgac |
11208173 |
T |
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| Q |
123 |
tttataaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaatttaagtgacaatgtca |
187 |
Q |
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| T |
11208172 |
tttataaaaagttaaaccttcattcaaattgtactgtgaaatttcatatttaagcgacaatgtca |
11208108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 11273259 - 11273096
Alignment:
| Q |
24 |
aatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaatggttgact |
123 |
Q |
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|||| ||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11273259 |
aatcattggttatcattattagcaaaatattgtttccagtcagtgtatgcagttacaacaggtgacatcaccggaatagtttcttctgtaattgttgact |
11273160 |
T |
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| Q |
124 |
ttataaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaatttaagtgacaatgtca |
187 |
Q |
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| T |
11273159 |
ttataaaaagttaaaccttcattcatattgtacggtgaaatttcaaatttaagtgacaatgtca |
11273096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 317
Target Start/End: Complemental strand, 11207967 - 11207896
Alignment:
| Q |
246 |
tgttgaatcacttaagtgatgacgatgtcagttgtgtaattttttatttataaaaaatctaaatgtcacact |
317 |
Q |
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||||| ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11207967 |
tgttgcatcgcttaagtgatgaggatgtgagttgtgtaattttttatttataaaaaatctaaatgtcacact |
11207896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 11272994 - 11272925
Alignment:
| Q |
246 |
tgttgaatcacttaagtgatgacgatgtcagttgtgtaattttttatttataaaaaatctaaatgtcaca |
315 |
Q |
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||||| || ||||||||||||| || ||||||||||||||||||||| || ||||||| ||||||||||| |
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| T |
11272994 |
tgttgcataacttaagtgatgaggaggtcagttgtgtaattttttatatagaaaaaatgtaaatgtcaca |
11272925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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