View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_25 (Length: 322)
Name: NF6579_low_25
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 55103493 - 55103785
Alignment:
| Q |
20 |
gtttaaactattgaataaattaattgatcaaatagtactggtagtattttatatatagtgattaagagaatatttaatttgaggcagatggagtagctct |
119 |
Q |
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| T |
55103493 |
gtttaaaatattgaataaattgattgataaaatagtactggtagtattttatatatagtgattaagagattatttaatttgaggcagatggagtagctct |
55103592 |
T |
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| Q |
120 |
tttctgggggatagattactacaacaatgaattattgcattctgataaggaacgagttggttctgtgacaacagagatactattggaaaaagatgagaat |
219 |
Q |
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| T |
55103593 |
tttctgggggatagattactacaacaatgaattattgcattctgataaggaccgagttggttctgtgacaacagagatactattggaaaaagatgagaat |
55103692 |
T |
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| Q |
220 |
tccttcacattgcaaaacggatggacatttccaagaagaatatatttcaacggtgaaaactgtgacatgcctttacctgacacattccctatg |
312 |
Q |
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| T |
55103693 |
tccttcacattgcaaaacggatggacatttccaagaagaatatatttcaacggtgaaaactgtgacatgcctttacctgacacattccctatg |
55103785 |
T |
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