View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_29 (Length: 303)
Name: NF6579_low_29
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 150114 - 150389
Alignment:
| Q |
10 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaatagagtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
150114 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
150213 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150214 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaa |
150313 |
T |
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| Q |
210 |
cttactttttgctagttcagtggcagcttttggataaccaattttaaaggtcacttcatcaattaagactttcttg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150314 |
cttactttttgctagttcagtggcagcttttggataaccaattttaaaggtcacttcatcaattaagactttcttg |
150389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 130281 - 130556
Alignment:
| Q |
10 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaatagagtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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| T |
130281 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
130380 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaa |
209 |
Q |
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| T |
130381 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
130480 |
T |
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| Q |
210 |
cttactttttgctagttcagtggcagcttttggataaccaattttaaaggtcacttcatcaattaagactttcttg |
285 |
Q |
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|||||| | ||| |||| ||| | ||||||||||||||| ||||| ||||||||||| |||| |||||||||| |
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| T |
130481 |
cttactatcgcctaattcaagggcggattttggataaccaatcttaaaagtcacttcatctattaggactttcttg |
130556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 10304485 - 10304330
Alignment:
| Q |
10 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaatagagtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| || ||||||||| || || |||||||||| ||||||||||| |
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| T |
10304485 |
aagaaaatgtgaatgatgaatttaaaagaagcttttctcatctccacgaggaactcaacagggtgtttcatactggataattcttctaacttgttgatca |
10304386 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgatagga |
165 |
Q |
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| T |
10304385 |
caatatcttcaatacgttctaagtattttactaatacattcctaccaatgatagga |
10304330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 892482 - 892416
Alignment:
| Q |
49 |
atctccataaggaactcaatagagtgtttcatgctagacaattcttctagcttgttgatcacaatatc |
116 |
Q |
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| T |
892482 |
atctccata-ggaactcaagagggtgttccatgatggataattcttctagcttgttgatcacaatatc |
892416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 285
Target Start/End: Original strand, 3959373 - 3959612
Alignment:
| Q |
46 |
ctcatctccataaggaactcaatagagtgtttcatgctagacaattcttctagcttgttgatcacaatatcctcaatacgctctaagtacatttctaata |
145 |
Q |
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|||||||| |||| ||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||| |
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| T |
3959373 |
ctcatctctttaagaaactcaacagggtgtttcatgctagacaattcttcaagcttgttgatcacaatatcctcaatacgctctagatacattgttgata |
3959472 |
T |
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| Q |
146 |
cattccgaccaatgataggagccgcgactagtcgtttaaaacgtccattttcactatttagtaacttactttttgctagttcagtggcagcttttggata |
245 |
Q |
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|||| ||| |||||||||| |||||||||||| |||||||| | |||| ||||||||| | || | | ||||||| ||||| ||||||||||| |
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| T |
3959473 |
cattgttaccggcaataggagccgtgactagtcgttttaaacgtccgtgttcattatttagtaccctattgtatgctagtacagtgatggcttttggata |
3959572 |
T |
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| Q |
246 |
accaattttaaaggtcacttcatcaattaagactttcttg |
285 |
Q |
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| T |
3959573 |
accaagcttaaaggttacttcatcatttaggactttcttg |
3959612 |
T |
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