View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_3 (Length: 662)
Name: NF6579_low_3
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 204 - 594
Target Start/End: Complemental strand, 31789150 - 31788769
Alignment:
| Q |
204 |
aaaaagtcaaataacatgttgttgacttttttctaagctnnnnnnnnn-tgttgctgattaatactagtcggtaagattttgaaaatttattgagtcaaa |
302 |
Q |
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| T |
31789150 |
aaaaagtctaataacatgttgttgacttttttctaagctaaaaaaaaactgttgctgattaatactagtcggtaagattttgaaaatttattgagtcaaa |
31789051 |
T |
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| Q |
303 |
atatttgttaattaattttgattaaaataactcttcaatttgaaaatataaatataaatcagatctatgnnnnnnnttcctactttatataaaatgaatt |
402 |
Q |
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| T |
31789050 |
gtatttgttaattaattttgattaaaataactcttcaatttgaaaatataaatataaatcagatctatg-aaaaaattcctactttatataaaatgaatt |
31788952 |
T |
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| Q |
403 |
gtcattatgtttcaaataattattaattacatgtttacattatataatcattggcaaaatataatcaacacaaaaacaatctatgtgtgttttgtttgta |
502 |
Q |
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| T |
31788951 |
gtgattatgtttcaaataattattaattacatgtttacattatataatcatcggcaa---------aacacaaaaacaatttatgtgtgttttgtttgta |
31788861 |
T |
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| Q |
503 |
tatgaagtgataaacaatatctgaaacttgcaagcataaatgtaacgtcagaggtttgaatccaaaataaagacgttcatcctagtaatatt |
594 |
Q |
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| T |
31788860 |
tatgaagtggcaaacaacgtccgaaacttacaagcataaatgtaatgttagaggtttgaatccaaaataaagatgttcattctaataatatt |
31788769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 653
Target Start/End: Complemental strand, 31788216 - 31788140
Alignment:
| Q |
578 |
ttcatcctagtaatattgacattataagttgaattaactcttacaaacaaa-aaatgtgtattttgctgatgatgtc |
653 |
Q |
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| T |
31788216 |
ttcatcctagtaatattgccattataagttgagttagctcttacgaacaaagaaatgtgtattttgcttatgttgtc |
31788140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31789350 - 31789317
Alignment:
| Q |
1 |
ttcttcttctttgatgaatgaatctgctttgttg |
34 |
Q |
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| T |
31789350 |
ttcttcttctttgatgaatgaatctgctttgttg |
31789317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 31789198 - 31789164
Alignment:
| Q |
142 |
aatagattaagatatttatttatttactatcggtg |
176 |
Q |
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| T |
31789198 |
aatagattaagatatttatttatttattatcggtg |
31789164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 6268368 - 6268413
Alignment:
| Q |
386 |
tttatataaaatgaattgtcattatgtttcaaataattattaatta |
431 |
Q |
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| T |
6268368 |
tttagataaaatcaattatcattatgcttcaaataattattaatta |
6268413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 43631466 - 43631421
Alignment:
| Q |
386 |
tttatataaaatgaattgtcattatgtttcaaataattattaatta |
431 |
Q |
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| T |
43631466 |
tttatataaaattaattgtcattatacttcaaataattattaatta |
43631421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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