View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_32 (Length: 290)
Name: NF6579_low_32
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 52727334 - 52727594
Alignment:
| Q |
15 |
gagtatggaatagaagtcaaatactgaaagttctgactcacgtttaggatttcaaggttgatgagattctcaagatcttccgggagagacctaagacagt |
114 |
Q |
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| T |
52727334 |
gagtatggaatagaagtcaaatactgaaagttctgactcacatttaggatttcaaggttgatgagattctcaagatcctccggaagagacctaagacagt |
52727433 |
T |
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| Q |
115 |
tcagtcttgcgtctaaaacctttagagatgtgaggtgagatgtggagcgtggaaggaagatcagcttgttagagttgactgataannnnnnnaggtttat |
214 |
Q |
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| T |
52727434 |
tcagtcttgcgtctaaaacctttagagatgtgaggtgagatgtggagcgtggaaggaagatcagcttgttagagttgactgataatttttttaggtttat |
52727533 |
T |
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| Q |
215 |
tagctcataccctattgtgtctggtagttggctcaacttgttgaaatttagattcaaatct |
275 |
Q |
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| T |
52727534 |
tagctcataccctattgtgtctggtagttggctcaacttgttgaaatttagattcaaatct |
52727594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 16729519 - 16729459
Alignment:
| Q |
210 |
tttattagctcataccctattgtgtctggtagttggctcaacttgttgaaatttagattca |
270 |
Q |
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| T |
16729519 |
tttatgagctcaaagcctattgtgtctggaagtttgctcaacatgttgaagttgagattca |
16729459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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