View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_36 (Length: 278)
Name: NF6579_low_36
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 48900331 - 48900200
Alignment:
| Q |
13 |
aatatagttcgtgtaaaataatccaattcttgaaatttttattacacgcatgattctatgttttgctatcctctgttagttacagttaattttgctgttt |
112 |
Q |
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| T |
48900331 |
aatatagttcgtgtaaaataatccaattcttgaaatttttattacacacatgattctatgttttgctatcctctgttagttacagttaattttgctgttt |
48900232 |
T |
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| Q |
113 |
gtcaaggttagtttgtgaaactctcatttcat |
144 |
Q |
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| T |
48900231 |
gtcaaggttagtttgtgaaactctcatttcat |
48900200 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 48900159 - 48900114
Alignment:
| Q |
141 |
tcatcatattcaatgagtagtaggggaatgcgatgagtgtttatct |
186 |
Q |
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| T |
48900159 |
tcatcatattcaatgagtagtaggggaatgcgatgagtgtttatct |
48900114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 4217498 - 4217598
Alignment:
| Q |
178 |
tgtttatctatttaaaggattggtgacattaaaaaggctagagaaatgatagttgtaattgtaatttggtttagacatatttctgataatttggtaagca |
277 |
Q |
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| T |
4217498 |
tgtttatctatttaaaggattggtgacattaaaaaggctagagaaatgctagttgtaattgtaatttggtttagacatatttctgataatttggaaagca |
4217597 |
T |
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| Q |
278 |
a |
278 |
Q |
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| T |
4217598 |
a |
4217598 |
T |
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