View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6579_low_4 (Length: 628)
Name: NF6579_low_4
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 13 - 610
Target Start/End: Original strand, 47687856 - 47688453
Alignment:
| Q |
13 |
agcagagaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47687856 |
agcagggaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
47687955 |
T |
|
| Q |
113 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47687956 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
47688055 |
T |
|
| Q |
213 |
ggaggtagtagctcaacattgggttctggtggtgggtttcctgacttcatccgcggtggaggagagggtttgcacagaagtcttattggaggtagtggca |
312 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688056 |
ggaagtagtagctcaacattgggttctggtggtgggtttcctgacttcatccgcggtggaggagagggtttgcacagaagtcttattggaggtagtggca |
47688155 |
T |
|
| Q |
313 |
agcaacaagagattgggatgaattcttcatctgatcaaggtcgaggcggcggtggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaa |
412 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688156 |
agcaacaagagattgggatgagttcttcatctgatcaaggtcgaggcggcggtggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaa |
47688255 |
T |
|
| Q |
413 |
ctagtactcaattagctgttcagatcgaatttggtttaattagttatcttgatccaattcggatgcattttaacttttatgatcaattagttaattagtt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688256 |
ctagtactcaattagctgttcagatcgaatttggtttaattagttatcttgatccaattcggatgcattttaacttttatgatcaattagttaattagtt |
47688355 |
T |
|
| Q |
513 |
agctaggagaactattaatcaagatcaattagctagctaggtgaaaaacttaattctgcttcttaattagataatccttgtttatcttgtgcttaatt |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47688356 |
agctaggagaactattaatcaagatcaattagctagctaggtgaaaaacttaattctgcttcttaattagataatccttgtttatcttgtgcttaatt |
47688453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 35836358 - 35836306
Alignment:
| Q |
365 |
tggtgatggcggcgaaaacctttacctcaaatcttctgatgatgggaactagt |
417 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| ||||||||| |||| |
|
|
| T |
35836358 |
tggtgatggcggcgaaacactttacctgaaatcttctggtgatgggaattagt |
35836306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 35836645 - 35836602
Alignment:
| Q |
39 |
gctcagcagatgacacaacaacaacaactaatggctgcacgttcctc |
85 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35836645 |
gctcagcagatgacacaacaacaat---taatggctgcacgttcctc |
35836602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University