View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_41 (Length: 253)
Name: NF6579_low_41
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_41 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 41508940 - 41509192
Alignment:
| Q |
13 |
aatatacca-gtataagtctaaaacatggaggggttttagatatgttacctaattccatattttgttcattaacaatgttactattttatcaataactaa |
111 |
Q |
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| T |
41508940 |
aatataccaagtataagtctaaaacatggaggagttttagatatgttacctaactccatattttgttcattaacaatgttactattttatcaataactaa |
41509039 |
T |
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| Q |
112 |
tatttccatcaaaaa-------tgaccccgcggtctt----taggtggaatattctctcgcaaacccattttttcagttggcaaaaactctaatctaaaa |
200 |
Q |
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| T |
41509040 |
tatttccatcaaaaaagttaattgaccccgcggtctttctttaggtggaatattctttcgcaaacccactttttcagttggcaaaaactctaatctaaaa |
41509139 |
T |
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| Q |
201 |
cattacctaaaagatctaagacaaatacactgactttgaatatgttaagttaa |
253 |
Q |
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| T |
41509140 |
cattacctaaaagatctaagacaaatacactgattttgaatatgttaagttaa |
41509192 |
T |
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