View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6579_low_42 (Length: 250)
Name: NF6579_low_42
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 52727259 - 52727021
Alignment:
| Q |
1 |
gttgtcttaacaagcttcaaaagttgagtgtggaagggaaccctctcacttcaccaccaccagaagtggtagagaggggattgcatatagtgaaggagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52727259 |
gttgtcttaacaagcttcaaaagttgagtgtggaagggaaccctctcacttcaccaccaccagaagtcgtagagaggggattgcatatagtgaaggagta |
52727160 |
T |
|
| Q |
101 |
cttgtgcaacaagatgaatgctggtcatcaaagcccaacaaagaagaagtcttgggttggaaggttggtcaagtatggaacattcaatgttagaagtgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52727159 |
cttgtgcaacaagatgaatgctggtcatcaaagcccaacaaagaagaagtcttgggttggaaggttggtcaagtatggaacattcaatgttagaagtgga |
52727060 |
T |
|
| Q |
201 |
gctcgtgaagaacatgaggctttcatcctccccgagtat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52727059 |
gctcgtgaagaacatgaggctttcatcctccccgagtat |
52727021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University