View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_6 (Length: 533)
Name: NF6579_low_6
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 50831125 - 50831010
Alignment:
| Q |
289 |
tgggcttttagaaactgcatgacattaccttgaattacagtgttcttaatatttcagtagtaccgttctaagtgtcgaaggctatgtagccaagtcaaag |
388 |
Q |
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| T |
50831125 |
tgggcttttagaaactgcatgacattaccttcaattacagtgtccttaatatttcggaagtacggttcaaagtgtcgatggctatgtcgccaagtcaaag |
50831026 |
T |
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| Q |
389 |
acggaggggagtgctt |
404 |
Q |
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| T |
50831025 |
accaaggggagtgctt |
50831010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 50831913 - 50831828
Alignment:
| Q |
19 |
ctaatatcttgttgaccggtacaactcagccaatatttaaaatgaccatataagacatttttgtctggttatcccgttatttacaa |
104 |
Q |
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| T |
50831913 |
ctaatatcttgttgactggtacaactcagccaagatttaaaataactatacaagacatttttgtctggttgtcccattatgtacaa |
50831828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 4515831 - 4515883
Alignment:
| Q |
19 |
ctaatatcttgttgaccggtacaactcagccaatatttaaaatgaccatataa |
71 |
Q |
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| T |
4515831 |
ctaatgtcttgttgactgggacaactcagccaatatttaaaatgaccatataa |
4515883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 50831228 - 50831176
Alignment:
| Q |
193 |
gaagctcagtgggctttatgaatatcaaactactgccgcatcagttgatccaa |
245 |
Q |
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| T |
50831228 |
gaagctcggtaggctttctgaatctcaaactactgccgcatcagttgatccaa |
50831176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 50831554 - 50831502
Alignment:
| Q |
143 |
taccattgactctaacgccagttctactcaggtctcagagagttgtgtcagaa |
195 |
Q |
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| T |
50831554 |
taccattaactccaacaccagttctattcaggcctcagagagttgtgtcagaa |
50831502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 1034167 - 1034206
Alignment:
| Q |
19 |
ctaatatcttgttgaccggtacaactcagccaatatttaa |
58 |
Q |
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| T |
1034167 |
ctaatatcttgttgaccggtacaactcagccaatatttaa |
1034206 |
T |
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