View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_7 (Length: 516)
Name: NF6579_low_7
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 25782745 - 25782262
Alignment:
| Q |
16 |
agatcatagtagcgtataaatagatatattttgtagggttttagctttgtgcactacttatatgtgtacttgtgaaatgagaaatgatgggtacttaata |
115 |
Q |
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| T |
25782745 |
agatcatagtagcgtataaatagatatattttgtagggttttagctttgtgcactacttatatgtgtacttgtgaaatgagaaatgatggatacttaata |
25782646 |
T |
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| Q |
116 |
cttatagtgtatagtgtgagttaaggtgcaagttgaaatgaatgattatttcattttcattttcttcaatccactatctagcacttgattaatggcccca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25782645 |
cttatagtgtatagtgtgagttaaggtgcaagttgaaatgaatgattatttcattttcattttcttcaatccactatctagcacttgattaatggtccca |
25782546 |
T |
|
| Q |
216 |
cttggatcatggttgacgcacgattttgacctgttaccaaaatatgatgatcattcgagcaagattttatattaaatcattttattttatacaataatga |
315 |
Q |
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| T |
25782545 |
cttggatcatggttgacgcacgattttgacctgttaccaaagtatgatgatcattcgagcaagattttatattaaatcattttattttatacaataatga |
25782446 |
T |
|
| Q |
316 |
tgacttttttggatggatgctgattttatataatggtttattatttagcaatattttaataatggtgaaaagaccaatgtaacgaataatttaatggaaa |
415 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25782445 |
tgacttttttggatggatgctgatttaagataatggtttattatttagcaatattttaataatggtgaaaagaccaatgtaacgaataatttaatggaaa |
25782346 |
T |
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| Q |
416 |
taaataaagagtttccctacaaacgtacgtaacaaataaattaagagaaatgattgtgtttaaaggcttggctctgcagatttt |
499 |
Q |
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| T |
25782345 |
taaataaagagtttccctacaaacgtacgtaacaaataaattaagagaaatgattgtgtttaaaggcttggctgtgcacatttt |
25782262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 26309331 - 26309246
Alignment:
| Q |
216 |
cttggatcatggttgacgcacgattttgacctgttaccaaaatatgatgatcattcgagcaagattttatat-taaatcattttat |
300 |
Q |
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|||| |||||||||||||||||| |||||||| ||||||||| || |||||||||||||||| |||||||| |||||||| |||| |
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| T |
26309331 |
cttgcatcatggttgacgcacgaccttgacctgctaccaaaatgtgttgatcattcgagcaagcttttatatataaatcatgttat |
26309246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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