View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6579_low_9 (Length: 463)
Name: NF6579_low_9
Description: NF6579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6579_low_9 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 2168 - 1733
Alignment:
| Q |
12 |
atcatcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatatt |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2168 |
atcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatatt |
2069 |
T |
|
| Q |
112 |
ttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgct |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2068 |
ttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgct |
1969 |
T |
|
| Q |
212 |
caaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaacttagaaat |
311 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1968 |
caaatgttaactttctttaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaactcagaaat |
1869 |
T |
|
| Q |
312 |
taaacaagttttatacatcattttcataatcattctccaaatgacaagtagattccaaaattagtactaaatccataaaaattcattttctaaaaaatat |
411 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1868 |
taaacaagttttatacattattttcatattcattctccaaatgacaagtagattccaaaattagtactaaatccatgaaaattcattttctaaaaaataa |
1769 |
T |
|
| Q |
412 |
cttctatagaaacaatcatataatataaccatattt |
447 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1768 |
cttctatagaaacaatcatataatataaccatattt |
1733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 8770 - 8335
Alignment:
| Q |
12 |
atcatcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatatt |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8770 |
atcagcaaagacgtcttcatcccctatatatcaagcccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaaccagcccatatt |
8671 |
T |
|
| Q |
112 |
ttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8670 |
ttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacatgctcaagttaaaaatctgct |
8571 |
T |
|
| Q |
212 |
caaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaacttagaaat |
311 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8570 |
caaatgttaactttctttaataataaagtctagtaagcttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaactcagaaat |
8471 |
T |
|
| Q |
312 |
taaacaagttttatacatcattttcataatcattctccaaatgacaagtagattccaaaattagtactaaatccataaaaattcattttctaaaaaatat |
411 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8470 |
taaacaagttttatacattattttcatattcattctccaaatgacaagtagattccaaaattagtactaaatccatgaaaattcattttctaaaaaataa |
8371 |
T |
|
| Q |
412 |
cttctatagaaacaatcatataatataaccatattt |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
8370 |
cttctatagaaacaatcatataatataaccatattt |
8335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 73 - 447
Target Start/End: Complemental strand, 17060186 - 17059812
Alignment:
| Q |
73 |
aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17060186 |
aaaaaagttaacaaaatgcaatagtaaccagcccatattttttcgaagcaatgaactctttctacacttgatgctcaaaccttactagagattaaaccat |
17060087 |
T |
|
| Q |
173 |
attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17060086 |
attgaaaagtaaagaacatgctcaagttaaaaatctgctcaaatgttaaccttctctaataataaagtctagtaagcttcttcaaaaatttaaattcttg |
17059987 |
T |
|
| Q |
273 |
taaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagtagattccaaaat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17059986 |
taaccaaatccaaatcatatgcatcacaaactcagaaattaaacaagttttatacatcattttcatattcattctccaaatgacaagtagattccaaaat |
17059887 |
T |
|
| Q |
373 |
tagtactaaatccataaaaattcattttctaaaaaatatcttctatagaaacaatcatataatataaccatattt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17059886 |
tagtactaaatccataaaaattcattttctaaaaaatatcttctatagaaacaatcatataatataaccatattt |
17059812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 408
Target Start/End: Original strand, 43262189 - 43262334
Alignment:
| Q |
263 |
taaattcttgtaaccaaatccaaatcatat--gcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagt |
360 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||||||| | || ||||||||| || | ||||||||||||| ||||||||| |||| |||| |
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|
| T |
43262189 |
taaagtcttgtaaccaaatccaaaccatatatgcatcacaaactca--aactaaacaagtcttgtgcatcattttcatatccattctccacatgagaagt |
43262286 |
T |
|
| Q |
361 |
agattccaaaattagtactaaatccataaaaattcattttctaaaaaa |
408 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| ||||| |
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|
| T |
43262287 |
agattccaaaattagtgctaaatccatgaaaattcattttctcaaaaa |
43262334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 271 - 387
Target Start/End: Complemental strand, 36229211 - 36229097
Alignment:
| Q |
271 |
tgtaaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagtagattccaaa |
370 |
Q |
| |
|
|||||| ||||||||| ||||||||||| | || | ||||||||||||| || | ||| ||||||||| |||||||||| ||| |||||||||||||| |
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|
| T |
36229211 |
tgtaacgaaatccaaaccatatgcatcaga--ctcaaaaattaaacaagtcttgtgcattattttcatattcattctccacgtgagaagtagattccaaa |
36229114 |
T |
|
| Q |
371 |
attagtactaaatccat |
387 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36229113 |
attagtactaaatccat |
36229097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 250 - 433
Target Start/End: Complemental strand, 48223273 - 48223089
Alignment:
| Q |
250 |
ttcttcaaaaatttaaattcttgtaaccaaatccaaatcatatgcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctcc |
349 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
48223273 |
ttcttcaaaaagttaaagtcttgtaaccaaatccaaatcatatgcagcacaaactcagaaattaaacaagttttatacatcattttcatattcattctcc |
48223174 |
T |
|
| Q |
350 |
aaatgacaagtagattccaaaattagtactaaatccataaaaattcattttctaa-aaaatatcttctatagaaacaatcatata |
433 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
48223173 |
agatgacaagtagattccaaaattagtactaaatccatgaaaattcattttctaaaaaaataacttctatagaaacaatcatata |
48223089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 408
Target Start/End: Complemental strand, 48223555 - 48223411
Alignment:
| Q |
266 |
attcttgtaaccaaatccaaatcatat--gcatcacaaacttagaaattaaacaagttttatacatcattttcataatcattctccaaatgacaagtaga |
363 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||| ||| | |||||||||| | || ||||||||||||||| ||||||||| |||| |||||| |
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|
| T |
48223555 |
attctggtaaccaaatccaaaccatatatgcatcacagactaaacaattaaacaaatcttctacatcattttcatatacattctccacatgaggagtaga |
48223456 |
T |
|
| Q |
364 |
ttccaaaattagtactaaatccataaaaattcattttctaaaaaa |
408 |
Q |
| |
|
|| |||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
48223455 |
ttacaaaattagtactaaatctatgaaaattcattttctcaaaaa |
48223411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 21990465 - 21990540
Alignment:
| Q |
25 |
tcttcatcccctatatatcaag-cccataaacaataaataaattaggagaaaaaagttaacaaaatgcaatagtaa |
99 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||| | |||||||||||| |||||||||||||||||||||| |
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|
| T |
21990465 |
tcttcatcccctatatataagggcccataaacaataaacagattaggagaaaagagttaacaaaatgcaatagtaa |
21990540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 5523996 - 5523931
Alignment:
| Q |
126 |
aactctttctacacttgatgctcaaaccttactagagattaaaccatattgaaaagtaaagaacat |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||| ||||| |
|
|
| T |
5523996 |
aactctttctatacttgatgctcaaaccttattgaagattaaaccatattgaagagtaaaaaacat |
5523931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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